miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 103290 0.74 0.747592
Target:  5'- uGGUCCGcGACCGCaUGAacGAgGUGCGCa -3'
miRNA:   3'- uCCAGGUuCUGGUG-AUU--CUgUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 9360 0.72 0.80657
Target:  5'- gGGGUCCAGGGgCA--GGGGCAUGCugGCg -3'
miRNA:   3'- -UCCAGGUUCUgGUgaUUCUGUACG--UG- -5'
25678 3' -50.7 NC_005337.1 + 117348 0.72 0.81584
Target:  5'- cGG-CCAAcgucGGCCGCguGGACGUGCGCa -3'
miRNA:   3'- uCCaGGUU----CUGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 16903 0.71 0.867214
Target:  5'- gAGGUCCAGGAUCuucuGGACcaGCACg -3'
miRNA:   3'- -UCCAGGUUCUGGugauUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 8294 0.7 0.903613
Target:  5'- aGGGUUaUAAGAUCACUAacuAGuacGCAUGCACg -3'
miRNA:   3'- -UCCAG-GUUCUGGUGAU---UC---UGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 15451 0.68 0.960622
Target:  5'- cGGUCCAGGAgaCACUGGcuggccaccGACG-GCGCg -3'
miRNA:   3'- uCCAGGUUCUg-GUGAUU---------CUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 3218 0.68 0.956746
Target:  5'- aGGGUcacguccgcacCCAGGGCCAg-GAGGCGcGCGCa -3'
miRNA:   3'- -UCCA-----------GGUUCUGGUgaUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 36208 0.69 0.948233
Target:  5'- --cUCCGAGACCAC--GGGCAUGaGCg -3'
miRNA:   3'- uccAGGUUCUGGUGauUCUGUACgUG- -5'
25678 3' -50.7 NC_005337.1 + 17019 0.69 0.948233
Target:  5'- gGGGUCUGcGGGCCGCgcgAAGGC--GCACg -3'
miRNA:   3'- -UCCAGGU-UCUGGUGa--UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 78110 0.69 0.930268
Target:  5'- gAGGUCCAGGACUACggcGuCGgccuugccgccccgcUGCACg -3'
miRNA:   3'- -UCCAGGUUCUGGUGauuCuGU---------------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 126410 0.69 0.927499
Target:  5'- cGG-CCAAGGCCGCccGGcgcgcgacggcgcGCGUGCGCg -3'
miRNA:   3'- uCCaGGUUCUGGUGauUC-------------UGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 97661 0.71 0.867214
Target:  5'- cGGUCgCGcgcgcgcuccAGGCCGC--GGGCGUGCACg -3'
miRNA:   3'- uCCAG-GU----------UCUGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 102148 0.72 0.842489
Target:  5'- gAGGUgUAcguGGACaCGCU-GGACAUGCGCg -3'
miRNA:   3'- -UCCAgGU---UCUG-GUGAuUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 115715 0.73 0.797123
Target:  5'- aAGGUCguGGACCACaucUucGACGUcGCACg -3'
miRNA:   3'- -UCCAGguUCUGGUG---AuuCUGUA-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 10720 0.74 0.746568
Target:  5'- -cGUCCAcGGCCAUguggucagggcggUGGGACGUGCACu -3'
miRNA:   3'- ucCAGGUuCUGGUG-------------AUUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 41653 0.75 0.652197
Target:  5'- uGGaUCGGGAUCGCUGAGACGcGCGCg -3'
miRNA:   3'- uCCaGGUUCUGGUGAUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 107296 0.77 0.5873
Target:  5'- cGGGUCCGAGACCgugaACUucuGCGUGUACg -3'
miRNA:   3'- -UCCAGGUUCUGG----UGAuucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 105199 0.77 0.576562
Target:  5'- gGGGUCCGcggccuggGGGCCGCUGAG-C-UGCGCg -3'
miRNA:   3'- -UCCAGGU--------UCUGGUGAUUCuGuACGUG- -5'
25678 3' -50.7 NC_005337.1 + 40795 0.79 0.462873
Target:  5'- gAGGUCCAcgGGACCAUgggcGACGUGUGCg -3'
miRNA:   3'- -UCCAGGU--UCUGGUGauu-CUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 130293 0.66 0.990008
Target:  5'- -cGUCCAAGcGCUGCUcAAGGCcgGUGCg -3'
miRNA:   3'- ucCAGGUUC-UGGUGA-UUCUGuaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.