miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 40875 1.11 0.005096
Target:  5'- cAGGUCCAAGACCACUAAGACAUGCACa -3'
miRNA:   3'- -UCCAGGUUCUGGUGAUUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 56917 0.69 0.938677
Target:  5'- cGGGaUCCGGGGCUACUucgGGGACA-GCGu -3'
miRNA:   3'- -UCC-AGGUUCUGGUGA---UUCUGUaCGUg -5'
25678 3' -50.7 NC_005337.1 + 68240 0.68 0.956746
Target:  5'- gGGGcUCCu---CCACgaagAGGACGUGCAUg -3'
miRNA:   3'- -UCC-AGGuucuGGUGa---UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 130293 0.66 0.990008
Target:  5'- -cGUCCAAGcGCUGCUcAAGGCcgGUGCg -3'
miRNA:   3'- ucCAGGUUC-UGGUGA-UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 41653 0.75 0.652197
Target:  5'- uGGaUCGGGAUCGCUGAGACGcGCGCg -3'
miRNA:   3'- uCCaGGUUCUGGUGAUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 10720 0.74 0.746568
Target:  5'- -cGUCCAcGGCCAUguggucagggcggUGGGACGUGCACu -3'
miRNA:   3'- ucCAGGUuCUGGUG-------------AUUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 102148 0.72 0.842489
Target:  5'- gAGGUgUAcguGGACaCGCU-GGACAUGCGCg -3'
miRNA:   3'- -UCCAgGU---UCUG-GUGAuUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 97661 0.71 0.867214
Target:  5'- cGGUCgCGcgcgcgcuccAGGCCGC--GGGCGUGCACg -3'
miRNA:   3'- uCCAG-GU----------UCUGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 113691 0.7 0.922347
Target:  5'- cGGGUCCGacccugAGcCCAUgGAGACGgagUGCACg -3'
miRNA:   3'- -UCCAGGU------UCuGGUGaUUCUGU---ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 97009 0.69 0.933501
Target:  5'- gGGGUCCGcGGACCuggacaaccgcaACUGcGACGUGgACg -3'
miRNA:   3'- -UCCAGGU-UCUGG------------UGAUuCUGUACgUG- -5'
25678 3' -50.7 NC_005337.1 + 69868 0.69 0.928058
Target:  5'- cGGGUCCAGcGACCGCacguuGGACcagaaguUGUACa -3'
miRNA:   3'- -UCCAGGUU-CUGGUGau---UCUGu------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 1307 0.7 0.922347
Target:  5'- cGGUCac-GACCACcAGGugcACGUGCACg -3'
miRNA:   3'- uCCAGguuCUGGUGaUUC---UGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 40795 0.79 0.462873
Target:  5'- gAGGUCCAcgGGACCAUgggcGACGUGUGCg -3'
miRNA:   3'- -UCCAGGU--UCUGGUGauu-CUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 132786 0.69 0.928058
Target:  5'- gAGGUgacggugcccaCCGAGACCAC-GAGGCAgUGCGu -3'
miRNA:   3'- -UCCA-----------GGUUCUGGUGaUUCUGU-ACGUg -5'
25678 3' -50.7 NC_005337.1 + 105199 0.77 0.576562
Target:  5'- gGGGUCCGcggccuggGGGCCGCUGAG-C-UGCGCg -3'
miRNA:   3'- -UCCAGGU--------UCUGGUGAUUCuGuACGUG- -5'
25678 3' -50.7 NC_005337.1 + 125083 0.7 0.910123
Target:  5'- uGGGUCCGcGACCGCgu-GGCcaaGCACc -3'
miRNA:   3'- -UCCAGGUuCUGGUGauuCUGua-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 9396 0.69 0.933501
Target:  5'- gAGGUCCucgGAGGCCguaggcggcauGCgauccacgAGGACGUGUACg -3'
miRNA:   3'- -UCCAGG---UUCUGG-----------UGa-------UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 128782 0.69 0.943587
Target:  5'- cGGaUUCGGGuCCAC--GGGCGUGCGCa -3'
miRNA:   3'- uCC-AGGUUCuGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 107296 0.77 0.5873
Target:  5'- cGGGUCCGAGACCgugaACUucuGCGUGUACg -3'
miRNA:   3'- -UCCAGGUUCUGG----UGAuucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 115715 0.73 0.797123
Target:  5'- aAGGUCguGGACCACaucUucGACGUcGCACg -3'
miRNA:   3'- -UCCAGguUCUGGUG---AuuCUGUA-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.