miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 31677 0.68 0.956746
Target:  5'- cGGUCCGGGAagaaCACgcaguAGACcaucuUGCGCa -3'
miRNA:   3'- uCCAGGUUCUg---GUGau---UCUGu----ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 9315 0.68 0.956746
Target:  5'- gAGGaacaugCCGAGACCGgCgacgcGGGACAUGCGa -3'
miRNA:   3'- -UCCa-----GGUUCUGGU-Ga----UUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 97009 0.69 0.933501
Target:  5'- gGGGUCCGcGGACCuggacaaccgcaACUGcGACGUGgACg -3'
miRNA:   3'- -UCCAGGU-UCUGG------------UGAUuCUGUACgUG- -5'
25678 3' -50.7 NC_005337.1 + 69868 0.69 0.928058
Target:  5'- cGGGUCCAGcGACCGCacguuGGACcagaaguUGUACa -3'
miRNA:   3'- -UCCAGGUU-CUGGUGau---UCUGu------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 33975 0.66 0.983328
Target:  5'- cGG-CCAGGGCCAggAAGG--UGCGCa -3'
miRNA:   3'- uCCaGGUUCUGGUgaUUCUguACGUG- -5'
25678 3' -50.7 NC_005337.1 + 8138 0.67 0.973721
Target:  5'- cGGGgacgCCGGGcaugGCCGCgcgcacGGCGUGCGCg -3'
miRNA:   3'- -UCCa---GGUUC----UGGUGauu---CUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 68240 0.68 0.956746
Target:  5'- gGGGcUCCu---CCACgaagAGGACGUGCAUg -3'
miRNA:   3'- -UCC-AGGuucuGGUGa---UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 57265 0.69 0.928058
Target:  5'- cGGgcaCGGGGCCGCgcgGGGCcgGCGCg -3'
miRNA:   3'- uCCag-GUUCUGGUGau-UCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 33351 0.68 0.96764
Target:  5'- gGGGUC--GGugCGCacGGugGUGCACa -3'
miRNA:   3'- -UCCAGguUCugGUGauUCugUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 113691 0.7 0.922347
Target:  5'- cGGGUCCGacccugAGcCCAUgGAGACGgagUGCACg -3'
miRNA:   3'- -UCCAGGU------UCuGGUGaUUCUGU---ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 4313 0.68 0.956746
Target:  5'- cGGuGUUCGAGACCACaGAGGgGUcgGCGCc -3'
miRNA:   3'- -UC-CAGGUUCUGGUGaUUCUgUA--CGUG- -5'
25678 3' -50.7 NC_005337.1 + 131322 0.68 0.956746
Target:  5'- gAGG-CgGAGACCGCgcu--CAUGCGCg -3'
miRNA:   3'- -UCCaGgUUCUGGUGauucuGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 128782 0.69 0.943587
Target:  5'- cGGaUUCGGGuCCAC--GGGCGUGCGCa -3'
miRNA:   3'- uCC-AGGUUCuGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 56917 0.69 0.938677
Target:  5'- cGGGaUCCGGGGCUACUucgGGGACA-GCGu -3'
miRNA:   3'- -UCC-AGGUUCUGGUGA---UUCUGUaCGUg -5'
25678 3' -50.7 NC_005337.1 + 9396 0.69 0.933501
Target:  5'- gAGGUCCucgGAGGCCguaggcggcauGCgauccacgAGGACGUGUACg -3'
miRNA:   3'- -UCCAGG---UUCUGG-----------UGa-------UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 132786 0.69 0.928058
Target:  5'- gAGGUgacggugcccaCCGAGACCAC-GAGGCAgUGCGu -3'
miRNA:   3'- -UCCA-----------GGUUCUGGUGaUUCUGU-ACGUg -5'
25678 3' -50.7 NC_005337.1 + 74144 0.66 0.986995
Target:  5'- -aGUCCAAGgacuacgagcACUACUucucGGACAUGUGCa -3'
miRNA:   3'- ucCAGGUUC----------UGGUGAu---UCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 59519 0.66 0.985249
Target:  5'- cGGUgaCCAGGuCguCgaugAAGGCGUGCACg -3'
miRNA:   3'- uCCA--GGUUCuGguGa---UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 37466 0.67 0.978928
Target:  5'- cAGGUCCGAGAacagacCCACgGGGA---GCACg -3'
miRNA:   3'- -UCCAGGUUCU------GGUGaUUCUguaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 101924 0.67 0.97643
Target:  5'- uGGUCCugGAGACCGuccuGGACGagcUGCGCc -3'
miRNA:   3'- uCCAGG--UUCUGGUgau-UCUGU---ACGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.