miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 37466 0.67 0.978928
Target:  5'- cAGGUCCGAGAacagacCCACgGGGA---GCACg -3'
miRNA:   3'- -UCCAGGUUCU------GGUGaUUCUguaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 28959 0.67 0.981224
Target:  5'- -cGUgCuGGGCaACUGGGGCGUGCGCa -3'
miRNA:   3'- ucCAgGuUCUGgUGAUUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 87736 0.66 0.986995
Target:  5'- gAGGUucaucgucaCCGGGGCCACUGcGGgGUGCc- -3'
miRNA:   3'- -UCCA---------GGUUCUGGUGAUuCUgUACGug -5'
25678 3' -50.7 NC_005337.1 + 115715 0.73 0.797123
Target:  5'- aAGGUCguGGACCACaucUucGACGUcGCACg -3'
miRNA:   3'- -UCCAGguUCUGGUG---AuuCUGUA-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 130293 0.66 0.990008
Target:  5'- -cGUCCAAGcGCUGCUcAAGGCcgGUGCg -3'
miRNA:   3'- ucCAGGUUC-UGGUGA-UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 105593 0.66 0.990008
Target:  5'- gAGGUCCGGGACUucGCcGAGgucggggccgGCGUGC-Cg -3'
miRNA:   3'- -UCCAGGUUCUGG--UGaUUC----------UGUACGuG- -5'
25678 3' -50.7 NC_005337.1 + 117348 0.72 0.81584
Target:  5'- cGG-CCAAcgucGGCCGCguGGACGUGCGCa -3'
miRNA:   3'- uCCaGGUU----CUGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 63827 0.66 0.990008
Target:  5'- uGGUCUAcgagcAGACC-CUGgaGGACGcGCACc -3'
miRNA:   3'- uCCAGGU-----UCUGGuGAU--UCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 45612 0.74 0.726909
Target:  5'- -cGcCCGAcGACCGCUGGGAUAUGCAg -3'
miRNA:   3'- ucCaGGUU-CUGGUGAUUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 16903 0.71 0.867214
Target:  5'- gAGGUCCAGGAUCuucuGGACcaGCACg -3'
miRNA:   3'- -UCCAGGUUCUGGugauUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 36208 0.69 0.948233
Target:  5'- --cUCCGAGACCAC--GGGCAUGaGCg -3'
miRNA:   3'- uccAGGUUCUGGUGauUCUGUACgUG- -5'
25678 3' -50.7 NC_005337.1 + 121498 0.66 0.986995
Target:  5'- cGGGUUCAc-GCCGCUGc-ACAUGUACa -3'
miRNA:   3'- -UCCAGGUucUGGUGAUucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 16519 0.66 0.985249
Target:  5'- cGGG-CCAAGACCAacggagagcAGGCGUGUcgGCg -3'
miRNA:   3'- -UCCaGGUUCUGGUgau------UCUGUACG--UG- -5'
25678 3' -50.7 NC_005337.1 + 132379 0.66 0.985249
Target:  5'- gGGGUUCccgGAGGCCGCcGAGugcGCAUaGCGCu -3'
miRNA:   3'- -UCCAGG---UUCUGGUGaUUC---UGUA-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 20038 0.66 0.983328
Target:  5'- -cGUCUGGaACCGCUcgGAGACcgGCGCg -3'
miRNA:   3'- ucCAGGUUcUGGUGA--UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 79136 0.67 0.981224
Target:  5'- cGGuGUCCuggaugGAGACCACgccGGACGaggGCACc -3'
miRNA:   3'- -UC-CAGG------UUCUGGUGau-UCUGUa--CGUG- -5'
25678 3' -50.7 NC_005337.1 + 110452 0.67 0.981224
Target:  5'- cGGg-CAGGACCuCcGAGGCGUGCAg -3'
miRNA:   3'- uCCagGUUCUGGuGaUUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 71250 0.68 0.960622
Target:  5'- cGGUCUucGACCGCgucGACAacGCGCu -3'
miRNA:   3'- uCCAGGuuCUGGUGauuCUGUa-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 15451 0.68 0.960622
Target:  5'- cGGUCCAGGAgaCACUGGcuggccaccGACG-GCGCg -3'
miRNA:   3'- uCCAGGUUCUg-GUGAUU---------CUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 3218 0.68 0.956746
Target:  5'- aGGGUcacguccgcacCCAGGGCCAg-GAGGCGcGCGCa -3'
miRNA:   3'- -UCCA-----------GGUUCUGGUgaUUCUGUaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.