miRNA display CGI


Results 61 - 77 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 122010 0.68 0.960622
Target:  5'- gGGGUgCGAcccGGCCGCgacGGACAUGCuCg -3'
miRNA:   3'- -UCCAgGUU---CUGGUGau-UCUGUACGuG- -5'
25678 3' -50.7 NC_005337.1 + 68696 0.68 0.963899
Target:  5'- cAGGUCCuguuuggacGACCGCUagcauggccGAGACGcccgugcUGCGCa -3'
miRNA:   3'- -UCCAGGuu-------CUGGUGA---------UUCUGU-------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 63827 0.66 0.990008
Target:  5'- uGGUCUAcgagcAGACC-CUGgaGGACGcGCACc -3'
miRNA:   3'- uCCAGGU-----UCUGGuGAU--UCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 121498 0.66 0.986995
Target:  5'- cGGGUUCAc-GCCGCUGc-ACAUGUACa -3'
miRNA:   3'- -UCCAGGUucUGGUGAUucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 66928 0.66 0.988579
Target:  5'- -cGUCCAugguGGCCACggacccGGACGcGCGCg -3'
miRNA:   3'- ucCAGGUu---CUGGUGau----UCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 16519 0.66 0.985249
Target:  5'- cGGG-CCAAGACCAacggagagcAGGCGUGUcgGCg -3'
miRNA:   3'- -UCCaGGUUCUGGUgau------UCUGUACG--UG- -5'
25678 3' -50.7 NC_005337.1 + 132379 0.66 0.985249
Target:  5'- gGGGUUCccgGAGGCCGCcGAGugcGCAUaGCGCu -3'
miRNA:   3'- -UCCAGG---UUCUGGUGaUUC---UGUA-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 20038 0.66 0.983328
Target:  5'- -cGUCUGGaACCGCUcgGAGACcgGCGCg -3'
miRNA:   3'- ucCAGGUUcUGGUGA--UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 79136 0.67 0.981224
Target:  5'- cGGuGUCCuggaugGAGACCACgccGGACGaggGCACc -3'
miRNA:   3'- -UC-CAGG------UUCUGGUGau-UCUGUa--CGUG- -5'
25678 3' -50.7 NC_005337.1 + 110452 0.67 0.981224
Target:  5'- cGGg-CAGGACCuCcGAGGCGUGCAg -3'
miRNA:   3'- uCCagGUUCUGGuGaUUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 99164 0.67 0.978928
Target:  5'- gGGcGUCCGc-GCCGCgcGGACgAUGCGCg -3'
miRNA:   3'- -UC-CAGGUucUGGUGauUCUG-UACGUG- -5'
25678 3' -50.7 NC_005337.1 + 32826 0.67 0.978928
Target:  5'- gAGGUaCGGGACCAUggcGGGCGUGaCAUc -3'
miRNA:   3'- -UCCAgGUUCUGGUGau-UCUGUAC-GUG- -5'
25678 3' -50.7 NC_005337.1 + 105548 0.67 0.97643
Target:  5'- -cGUCCAc--CCGCUGGGGCAggacGCACa -3'
miRNA:   3'- ucCAGGUucuGGUGAUUCUGUa---CGUG- -5'
25678 3' -50.7 NC_005337.1 + 93356 0.67 0.973721
Target:  5'- gAGGUCgAGGACgACUgGGGGCAaGUGCc -3'
miRNA:   3'- -UCCAGgUUCUGgUGA-UUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 85378 0.67 0.973721
Target:  5'- -cGUCCGAGAUgCACUGgauGcCGUGCGCg -3'
miRNA:   3'- ucCAGGUUCUG-GUGAUu--CuGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 11266 0.67 0.973721
Target:  5'- -cGUCCAuguuGGCCACcGuuACGUGCGCg -3'
miRNA:   3'- ucCAGGUu---CUGGUGaUucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 46335 0.8 0.433884
Target:  5'- gAGGUCCGGGcuGCCGCc--GGCGUGCACg -3'
miRNA:   3'- -UCCAGGUUC--UGGUGauuCUGUACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.