miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 5' -59 NC_005337.1 + 81627 0.66 0.76259
Target:  5'- uGGC-CU--CCUCCauggucagcaGGUCGUCCUCGAa -3'
miRNA:   3'- uCCGuGAacGGGGG----------UCAGCAGGAGCU- -5'
25678 5' -59 NC_005337.1 + 62048 0.66 0.756928
Target:  5'- aAGGCGC--GCCCCCacucgacgaugcccgGGUgGUCgUCGGc -3'
miRNA:   3'- -UCCGUGaaCGGGGG---------------UCAgCAGgAGCU- -5'
25678 5' -59 NC_005337.1 + 79094 0.66 0.753131
Target:  5'- -cGCGCaUGCCCaCCGGcaCGUCgUCGAc -3'
miRNA:   3'- ucCGUGaACGGG-GGUCa-GCAGgAGCU- -5'
25678 5' -59 NC_005337.1 + 106522 0.66 0.753131
Target:  5'- uAGcGUGCUUGCUuaaCCAGUCGUCgUCu- -3'
miRNA:   3'- -UC-CGUGAACGGg--GGUCAGCAGgAGcu -5'
25678 5' -59 NC_005337.1 + 97176 0.66 0.743567
Target:  5'- cGGCGCUgcUGCgCUCCGG-CGagCUCGAc -3'
miRNA:   3'- uCCGUGA--ACG-GGGGUCaGCagGAGCU- -5'
25678 5' -59 NC_005337.1 + 74926 0.66 0.733907
Target:  5'- gAGGCg---GCCgcgcaCCaguGGUCGUCCUCGAa -3'
miRNA:   3'- -UCCGugaaCGGg----GG---UCAGCAGGAGCU- -5'
25678 5' -59 NC_005337.1 + 23017 0.66 0.733907
Target:  5'- cGGCACUUGCgCCgCgucgAGgacgUGUCCUCGu -3'
miRNA:   3'- uCCGUGAACG-GGgG----UCa---GCAGGAGCu -5'
25678 5' -59 NC_005337.1 + 40852 0.67 0.714337
Target:  5'- cGGGaCACgcgucgccgUGCCCCCGGUgcagagggcggcCGUCCUgGu -3'
miRNA:   3'- -UCC-GUGa--------ACGGGGGUCA------------GCAGGAgCu -5'
25678 5' -59 NC_005337.1 + 91733 0.67 0.714337
Target:  5'- uAGcGCACguaGCCCCCGGccacgcgcgCGUgcgCCUCGAa -3'
miRNA:   3'- -UC-CGUGaa-CGGGGGUCa--------GCA---GGAGCU- -5'
25678 5' -59 NC_005337.1 + 15602 0.67 0.714337
Target:  5'- uGGGguCUUGCCCCaaaGGuUCGUCUcCGu -3'
miRNA:   3'- -UCCguGAACGGGGg--UC-AGCAGGaGCu -5'
25678 5' -59 NC_005337.1 + 60691 0.67 0.684488
Target:  5'- gAGGCACUUGCCgaaggUCCGGUUgGUCa-CGAa -3'
miRNA:   3'- -UCCGUGAACGG-----GGGUCAG-CAGgaGCU- -5'
25678 5' -59 NC_005337.1 + 42133 0.67 0.674442
Target:  5'- cGGCGCUgGCCCgCGGcgCGUCCggGGu -3'
miRNA:   3'- uCCGUGAaCGGGgGUCa-GCAGGagCU- -5'
25678 5' -59 NC_005337.1 + 14355 0.67 0.674442
Target:  5'- -uGCACUccacgacgaUGCCCgCCAgGUgGUCCUUGAu -3'
miRNA:   3'- ucCGUGA---------ACGGG-GGU-CAgCAGGAGCU- -5'
25678 5' -59 NC_005337.1 + 76408 0.68 0.654257
Target:  5'- gGGGCGCUgGCgCCC-GUCcUCCUUGGu -3'
miRNA:   3'- -UCCGUGAaCGgGGGuCAGcAGGAGCU- -5'
25678 5' -59 NC_005337.1 + 95841 0.68 0.654257
Target:  5'- cGGGCgugaugACgcGCCCCUGGUCGUCCa--- -3'
miRNA:   3'- -UCCG------UGaaCGGGGGUCAGCAGGagcu -5'
25678 5' -59 NC_005337.1 + 102982 0.68 0.644135
Target:  5'- cGGGUACUucUGCCCCuCGGaCGUgCC-CGAg -3'
miRNA:   3'- -UCCGUGA--ACGGGG-GUCaGCA-GGaGCU- -5'
25678 5' -59 NC_005337.1 + 104663 0.68 0.613742
Target:  5'- aGGGCGCgUGCCCaaGGUCGUCauggCGu -3'
miRNA:   3'- -UCCGUGaACGGGggUCAGCAGga--GCu -5'
25678 5' -59 NC_005337.1 + 8717 0.69 0.573439
Target:  5'- gGGGCGuccGCCCCaC-GUCGUCCUUGGc -3'
miRNA:   3'- -UCCGUgaaCGGGG-GuCAGCAGGAGCU- -5'
25678 5' -59 NC_005337.1 + 68957 0.69 0.553506
Target:  5'- cGGCACcggcgUGCCCuuCCAGUCG-CC-CGAc -3'
miRNA:   3'- uCCGUGa----ACGGG--GGUCAGCaGGaGCU- -5'
25678 5' -59 NC_005337.1 + 93313 0.7 0.543616
Target:  5'- uGGCGC-UGUaCCCGGgcuucaCGUCCUCGAu -3'
miRNA:   3'- uCCGUGaACGgGGGUCa-----GCAGGAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.