Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25678 | 5' | -59 | NC_005337.1 | + | 79094 | 0.66 | 0.753131 |
Target: 5'- -cGCGCaUGCCCaCCGGcaCGUCgUCGAc -3' miRNA: 3'- ucCGUGaACGGG-GGUCa-GCAGgAGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 62048 | 0.66 | 0.756928 |
Target: 5'- aAGGCGC--GCCCCCacucgacgaugcccgGGUgGUCgUCGGc -3' miRNA: 3'- -UCCGUGaaCGGGGG---------------UCAgCAGgAGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 106522 | 0.66 | 0.753131 |
Target: 5'- uAGcGUGCUUGCUuaaCCAGUCGUCgUCu- -3' miRNA: 3'- -UC-CGUGAACGGg--GGUCAGCAGgAGcu -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 97176 | 0.66 | 0.743567 |
Target: 5'- cGGCGCUgcUGCgCUCCGG-CGagCUCGAc -3' miRNA: 3'- uCCGUGA--ACG-GGGGUCaGCagGAGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 23017 | 0.66 | 0.733907 |
Target: 5'- cGGCACUUGCgCCgCgucgAGgacgUGUCCUCGu -3' miRNA: 3'- uCCGUGAACG-GGgG----UCa---GCAGGAGCu -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 81627 | 0.66 | 0.76259 |
Target: 5'- uGGC-CU--CCUCCauggucagcaGGUCGUCCUCGAa -3' miRNA: 3'- uCCGuGAacGGGGG----------UCAGCAGGAGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 74926 | 0.66 | 0.733907 |
Target: 5'- gAGGCg---GCCgcgcaCCaguGGUCGUCCUCGAa -3' miRNA: 3'- -UCCGugaaCGGg----GG---UCAGCAGGAGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 40852 | 0.67 | 0.714337 |
Target: 5'- cGGGaCACgcgucgccgUGCCCCCGGUgcagagggcggcCGUCCUgGu -3' miRNA: 3'- -UCC-GUGa--------ACGGGGGUCA------------GCAGGAgCu -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 42133 | 0.67 | 0.674442 |
Target: 5'- cGGCGCUgGCCCgCGGcgCGUCCggGGu -3' miRNA: 3'- uCCGUGAaCGGGgGUCa-GCAGGagCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 14355 | 0.67 | 0.674442 |
Target: 5'- -uGCACUccacgacgaUGCCCgCCAgGUgGUCCUUGAu -3' miRNA: 3'- ucCGUGA---------ACGGG-GGU-CAgCAGGAGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 15602 | 0.67 | 0.714337 |
Target: 5'- uGGGguCUUGCCCCaaaGGuUCGUCUcCGu -3' miRNA: 3'- -UCCguGAACGGGGg--UC-AGCAGGaGCu -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 60691 | 0.67 | 0.684488 |
Target: 5'- gAGGCACUUGCCgaaggUCCGGUUgGUCa-CGAa -3' miRNA: 3'- -UCCGUGAACGG-----GGGUCAG-CAGgaGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 91733 | 0.67 | 0.714337 |
Target: 5'- uAGcGCACguaGCCCCCGGccacgcgcgCGUgcgCCUCGAa -3' miRNA: 3'- -UC-CGUGaa-CGGGGGUCa--------GCA---GGAGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 95841 | 0.68 | 0.654257 |
Target: 5'- cGGGCgugaugACgcGCCCCUGGUCGUCCa--- -3' miRNA: 3'- -UCCG------UGaaCGGGGGUCAGCAGGagcu -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 104663 | 0.68 | 0.613742 |
Target: 5'- aGGGCGCgUGCCCaaGGUCGUCauggCGu -3' miRNA: 3'- -UCCGUGaACGGGggUCAGCAGga--GCu -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 76408 | 0.68 | 0.654257 |
Target: 5'- gGGGCGCUgGCgCCC-GUCcUCCUUGGu -3' miRNA: 3'- -UCCGUGAaCGgGGGuCAGcAGGAGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 102982 | 0.68 | 0.644135 |
Target: 5'- cGGGUACUucUGCCCCuCGGaCGUgCC-CGAg -3' miRNA: 3'- -UCCGUGA--ACGGGG-GUCaGCA-GGaGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 8717 | 0.69 | 0.573439 |
Target: 5'- gGGGCGuccGCCCCaC-GUCGUCCUUGGc -3' miRNA: 3'- -UCCGUgaaCGGGG-GuCAGCAGGAGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 68957 | 0.69 | 0.553506 |
Target: 5'- cGGCACcggcgUGCCCuuCCAGUCG-CC-CGAc -3' miRNA: 3'- uCCGUGa----ACGGG--GGUCAGCaGGaGCU- -5' |
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25678 | 5' | -59 | NC_005337.1 | + | 93313 | 0.7 | 0.543616 |
Target: 5'- uGGCGC-UGUaCCCGGgcuucaCGUCCUCGAu -3' miRNA: 3'- uCCGUGaACGgGGGUCa-----GCAGGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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