miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 3' -64.6 NC_005337.1 + 38255 0.66 0.477026
Target:  5'- gACGCgGCGcGCguuCGCGCUCGCGGcGUu -3'
miRNA:   3'- gUGCGgCGC-CGac-GCGUGGGCGUC-CA- -5'
25684 3' -64.6 NC_005337.1 + 62603 0.66 0.477026
Target:  5'- cUAUGUCGCcGCcGUGCACCCGCGcGUu -3'
miRNA:   3'- -GUGCGGCGcCGaCGCGUGGGCGUcCA- -5'
25684 3' -64.6 NC_005337.1 + 4586 0.66 0.477026
Target:  5'- gGCGCgGCGaCUGCGCguGCUggUGCAGGa -3'
miRNA:   3'- gUGCGgCGCcGACGCG--UGG--GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 54854 0.66 0.477026
Target:  5'- gCGCGCC-CGGCguucaucgagaUGcCGCGCCgcCGCGGGa -3'
miRNA:   3'- -GUGCGGcGCCG-----------AC-GCGUGG--GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 49802 0.66 0.476121
Target:  5'- uCACGUCGCugacggaggugccGGCcGCGCcCuCCGCGGGc -3'
miRNA:   3'- -GUGCGGCG-------------CCGaCGCGuG-GGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 85348 0.66 0.476121
Target:  5'- uCACGCCGCaGUUGCcggacgcgGUGCCCGUguuuaugaacuccAGGUg -3'
miRNA:   3'- -GUGCGGCGcCGACG--------CGUGGGCG-------------UCCA- -5'
25684 3' -64.6 NC_005337.1 + 38328 0.66 0.474315
Target:  5'- aCACGCCgGCGccgggcgaguacgcGCUGCGCAUCaCGCAcacgacGGg -3'
miRNA:   3'- -GUGCGG-CGC--------------CGACGCGUGG-GCGU------CCa -5'
25684 3' -64.6 NC_005337.1 + 18655 0.66 0.46802
Target:  5'- cCGCGCCGCcgccGGCggGCGgAUCCG-AGGg -3'
miRNA:   3'- -GUGCGGCG----CCGa-CGCgUGGGCgUCCa -5'
25684 3' -64.6 NC_005337.1 + 716 0.66 0.46802
Target:  5'- gCACGcCCGCGGCcGCGgGguaCGCGGGc -3'
miRNA:   3'- -GUGC-GGCGCCGaCGCgUgg-GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 122904 0.66 0.46802
Target:  5'- -cCGCCGaUGGCgaGCGCGCUCG-AGGg -3'
miRNA:   3'- guGCGGC-GCCGa-CGCGUGGGCgUCCa -5'
25684 3' -64.6 NC_005337.1 + 1853 0.66 0.46802
Target:  5'- uCGCaGCCGCGGCUGaugaGCuCCucgaagauCGCGGGc -3'
miRNA:   3'- -GUG-CGGCGCCGACg---CGuGG--------GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 51526 0.66 0.46802
Target:  5'- gGCGCUcuucggcguGCGGCUGcCGgGCCUGgAGGc -3'
miRNA:   3'- gUGCGG---------CGCCGAC-GCgUGGGCgUCCa -5'
25684 3' -64.6 NC_005337.1 + 84563 0.66 0.46802
Target:  5'- aACG-CGCGGCaGCGCGugaCCGCgaGGGUg -3'
miRNA:   3'- gUGCgGCGCCGaCGCGUg--GGCG--UCCA- -5'
25684 3' -64.6 NC_005337.1 + 100225 0.66 0.46802
Target:  5'- gGCGCCGCGuGCgcgugaucGCGguCCCGCccgccaugaccGGGa -3'
miRNA:   3'- gUGCGGCGC-CGa-------CGCguGGGCG-----------UCCa -5'
25684 3' -64.6 NC_005337.1 + 87900 0.66 0.46802
Target:  5'- cCugGCUGaCGcGCUgGCGCGCCUGCGccGGc -3'
miRNA:   3'- -GugCGGC-GC-CGA-CGCGUGGGCGU--CCa -5'
25684 3' -64.6 NC_005337.1 + 716 0.66 0.46802
Target:  5'- gCACGcCCGCGGCcGCGgGguaCGCGGGc -3'
miRNA:   3'- -GUGC-GGCGCCGaCGCgUgg-GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 99606 0.66 0.467124
Target:  5'- uGCGCCGUgagcaacGGCUacgucGUGCGCgUGCGGGa -3'
miRNA:   3'- gUGCGGCG-------CCGA-----CGCGUGgGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 66099 0.66 0.459102
Target:  5'- gGCGCUguGCGGCgucUGCGCGCgCGUGGaGUu -3'
miRNA:   3'- gUGCGG--CGCCG---ACGCGUGgGCGUC-CA- -5'
25684 3' -64.6 NC_005337.1 + 69854 0.66 0.459102
Target:  5'- aCACGCUGUGGCcGCcaaGCGgCCGCugcuGGa -3'
miRNA:   3'- -GUGCGGCGCCGaCG---CGUgGGCGu---CCa -5'
25684 3' -64.6 NC_005337.1 + 13702 0.66 0.459102
Target:  5'- gCACGCCG-GGUUGcCGCACaccaccgagcuCCGCgAGGa -3'
miRNA:   3'- -GUGCGGCgCCGAC-GCGUG-----------GGCG-UCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.