miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 5' -59.7 NC_005337.1 + 1061 0.67 0.659852
Target:  5'- gAGGCCgGCGGGGgcggacugcGGgACGGAgCGGGc -3'
miRNA:   3'- -UCUGGgUGCCCC---------UCgUGCUUgGCCUu -5'
25684 5' -59.7 NC_005337.1 + 974 0.67 0.659852
Target:  5'- uGGAgCgGCGGGGcuGGCGCGGcGCgCGGAGg -3'
miRNA:   3'- -UCUgGgUGCCCC--UCGUGCU-UG-GCCUU- -5'
25684 5' -59.7 NC_005337.1 + 1061 0.67 0.659852
Target:  5'- gAGGCCgGCGGGGgcggacugcGGgACGGAgCGGGc -3'
miRNA:   3'- -UCUGGgUGCCCC---------UCgUGCUUgGCCUu -5'
25684 5' -59.7 NC_005337.1 + 974 0.67 0.659852
Target:  5'- uGGAgCgGCGGGGcuGGCGCGGcGCgCGGAGg -3'
miRNA:   3'- -UCUgGgUGCCCC--UCGUGCU-UG-GCCUU- -5'
25684 5' -59.7 NC_005337.1 + 120450 0.67 0.649759
Target:  5'- gAGuCCCuGCGGGGcgcgcucgAGCGCGcGCUGGAu -3'
miRNA:   3'- -UCuGGG-UGCCCC--------UCGUGCuUGGCCUu -5'
25684 5' -59.7 NC_005337.1 + 59737 0.67 0.649759
Target:  5'- -cGCCgCGCGGcGGAGCGCGucuCCGcGAGc -3'
miRNA:   3'- ucUGG-GUGCC-CCUCGUGCuu-GGC-CUU- -5'
25684 5' -59.7 NC_005337.1 + 27912 0.67 0.649759
Target:  5'- cAGGuuCugGGGGcGCGCGAuCUGGAc -3'
miRNA:   3'- -UCUggGugCCCCuCGUGCUuGGCCUu -5'
25684 5' -59.7 NC_005337.1 + 64792 0.67 0.649759
Target:  5'- gGGGuccUCCGCGcGGcGGCACGAcGCCGGAAc -3'
miRNA:   3'- -UCU---GGGUGC-CCcUCGUGCU-UGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 117272 0.67 0.639652
Target:  5'- cAGACCCcgacgagucgGCGGGGuccCGCGuGCUGGAGg -3'
miRNA:   3'- -UCUGGG----------UGCCCCuc-GUGCuUGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 122284 0.68 0.619429
Target:  5'- aGGACCgggaCGCGGaGGAGCuccGCGAGgCGGGc -3'
miRNA:   3'- -UCUGG----GUGCC-CCUCG---UGCUUgGCCUu -5'
25684 5' -59.7 NC_005337.1 + 117830 0.68 0.599243
Target:  5'- gGGACCCggGCGGGGugcGCACGcAGgCGGu- -3'
miRNA:   3'- -UCUGGG--UGCCCCu--CGUGC-UUgGCCuu -5'
25684 5' -59.7 NC_005337.1 + 5720 0.68 0.589183
Target:  5'- cAGGCCggaGCGGGGAGCcacGCGGccguagcacccAUCGGGAa -3'
miRNA:   3'- -UCUGGg--UGCCCCUCG---UGCU-----------UGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 1175 0.68 0.589183
Target:  5'- cGGCCCGCuaGGcGGuGCGCGAGCgCGGc- -3'
miRNA:   3'- uCUGGGUG--CC-CCuCGUGCUUG-GCCuu -5'
25684 5' -59.7 NC_005337.1 + 49924 0.68 0.579153
Target:  5'- cAGGCgcgagCGCGGGGAcaGCACGAccagGCUGGAGg -3'
miRNA:   3'- -UCUGg----GUGCCCCU--CGUGCU----UGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 20768 0.68 0.566169
Target:  5'- aGGGCCgcggccacgcgcuuCGCGGGGAcGgGCGuGCCGGAGc -3'
miRNA:   3'- -UCUGG--------------GUGCCCCU-CgUGCuUGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 52570 0.69 0.55921
Target:  5'- uGGCuCCGCGGGGAcgGCGCGGcggcGCUGGc- -3'
miRNA:   3'- uCUG-GGUGCCCCU--CGUGCU----UGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 98906 0.69 0.55921
Target:  5'- cGAgCC-CGGGGAGUACacgguGAGCCGGc- -3'
miRNA:   3'- uCUgGGuGCCCCUCGUG-----CUUGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 109568 0.69 0.529678
Target:  5'- cGGAacUCCGCGGGGuGCACGAuCCGc-- -3'
miRNA:   3'- -UCU--GGGUGCCCCuCGUGCUuGGCcuu -5'
25684 5' -59.7 NC_005337.1 + 32090 0.69 0.519959
Target:  5'- cGGuACCgCGCGGGGAugacGUGCGAGgCGGAGa -3'
miRNA:   3'- -UC-UGG-GUGCCCCU----CGUGCUUgGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 60219 0.69 0.519959
Target:  5'- cGGCUUggGCGcGGGGGCugGGGCUGGGGu -3'
miRNA:   3'- uCUGGG--UGC-CCCUCGugCUUGGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.