miRNA display CGI


Results 1 - 20 of 921 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25685 3' -62.3 NC_005337.1 + 35946 0.65 0.64742
Target:  5'- cGCAgGCAGcaccggguagggacGCCGCCGCG-GCaggggguaacaaaaaGCGCa -3'
miRNA:   3'- cCGUgCGUC--------------UGGUGGCGCgCGg--------------CGCG- -5'
25685 3' -62.3 NC_005337.1 + 100252 0.66 0.643495
Target:  5'- cGCcCGCcauGACCgggagcaccuACCGCGCGCgcaagaggcgguccgUGCGCa -3'
miRNA:   3'- cCGuGCGu--CUGG----------UGGCGCGCG---------------GCGCG- -5'
25685 3' -62.3 NC_005337.1 + 109643 0.66 0.643495
Target:  5'- aGCGCGUccACCAgcuuuuccgucaccuCCGUGC-CCGCGCc -3'
miRNA:   3'- cCGUGCGucUGGU---------------GGCGCGcGGCGCG- -5'
25685 3' -62.3 NC_005337.1 + 37978 0.66 0.643495
Target:  5'- cGGcCAUGCAGaucaugcaccccaacGCCGCCGgGaaCGCCG-GCa -3'
miRNA:   3'- -CC-GUGCGUC---------------UGGUGGCgC--GCGGCgCG- -5'
25685 3' -62.3 NC_005337.1 + 29456 0.66 0.639568
Target:  5'- gGGCGCGuCAGAgCAgaGCaccaGCCGCGg -3'
miRNA:   3'- -CCGUGC-GUCUgGUggCGcg--CGGCGCg -5'
25685 3' -62.3 NC_005337.1 + 65715 0.66 0.639568
Target:  5'- cGCACGCGGuggg--GCGCGCCcgGCGCc -3'
miRNA:   3'- cCGUGCGUCugguggCGCGCGG--CGCG- -5'
25685 3' -62.3 NC_005337.1 + 104882 0.66 0.639568
Target:  5'- uGGCACaCGGugggggaccCCACCa-GCGCCGCGa -3'
miRNA:   3'- -CCGUGcGUCu--------GGUGGcgCGCGGCGCg -5'
25685 3' -62.3 NC_005337.1 + 85726 0.66 0.639568
Target:  5'- cGU-CGCAGuCCGCCGuCGCGgaCGCGg -3'
miRNA:   3'- cCGuGCGUCuGGUGGC-GCGCg-GCGCg -5'
25685 3' -62.3 NC_005337.1 + 106544 0.66 0.639568
Target:  5'- -cUACGUcGugCGCaagaGCGCGCUGCGg -3'
miRNA:   3'- ccGUGCGuCugGUGg---CGCGCGGCGCg -5'
25685 3' -62.3 NC_005337.1 + 82557 0.66 0.639568
Target:  5'- aGGCA-GCucGAUCAUcagCGCGuCGCCGuCGCa -3'
miRNA:   3'- -CCGUgCGu-CUGGUG---GCGC-GCGGC-GCG- -5'
25685 3' -62.3 NC_005337.1 + 15787 0.66 0.639568
Target:  5'- cGCACGgucACCGCCGgGaacauGCCGUGCu -3'
miRNA:   3'- cCGUGCgucUGGUGGCgCg----CGGCGCG- -5'
25685 3' -62.3 NC_005337.1 + 72373 0.66 0.639568
Target:  5'- -uCGCGCGGACgGCCGuCGCgGUCaGCGa -3'
miRNA:   3'- ccGUGCGUCUGgUGGC-GCG-CGG-CGCg -5'
25685 3' -62.3 NC_005337.1 + 120145 0.66 0.639568
Target:  5'- aGCuCGCGGACUucguCCGCGUGgccaCCGCccGCa -3'
miRNA:   3'- cCGuGCGUCUGGu---GGCGCGC----GGCG--CG- -5'
25685 3' -62.3 NC_005337.1 + 28583 0.66 0.639568
Target:  5'- gGGCGCuGC-GACCAgCGC-CaCCGCGUc -3'
miRNA:   3'- -CCGUG-CGuCUGGUgGCGcGcGGCGCG- -5'
25685 3' -62.3 NC_005337.1 + 12584 0.66 0.639568
Target:  5'- cGCGCGCGu-UCACguugGCGC-CCGCGCg -3'
miRNA:   3'- cCGUGCGUcuGGUGg---CGCGcGGCGCG- -5'
25685 3' -62.3 NC_005337.1 + 58640 0.66 0.639568
Target:  5'- cGGaCGCGCccaucacGACgGcCCGCGCGUCcucgGCGCu -3'
miRNA:   3'- -CC-GUGCGu------CUGgU-GGCGCGCGG----CGCG- -5'
25685 3' -62.3 NC_005337.1 + 10294 0.66 0.639568
Target:  5'- uGGCGCGCG---CAUCG-GCGCCGUucGCg -3'
miRNA:   3'- -CCGUGCGUcugGUGGCgCGCGGCG--CG- -5'
25685 3' -62.3 NC_005337.1 + 24072 0.66 0.639568
Target:  5'- aGCuguCGCuGACCGCCGagGaCGUCGUGUu -3'
miRNA:   3'- cCGu--GCGuCUGGUGGCg-C-GCGGCGCG- -5'
25685 3' -62.3 NC_005337.1 + 65453 0.66 0.639568
Target:  5'- cGGCACu----CCACCGaGCGCCGC-Ca -3'
miRNA:   3'- -CCGUGcgucuGGUGGCgCGCGGCGcG- -5'
25685 3' -62.3 NC_005337.1 + 21404 0.66 0.639568
Target:  5'- cGGC-CGCGGcAUCGucgaCGUGgGCCGCGg -3'
miRNA:   3'- -CCGuGCGUC-UGGUg---GCGCgCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.