miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25685 5' -57.1 NC_005337.1 + 39926 0.66 0.844924
Target:  5'- --cGuGUGGCGCGCGcUgAGCGUCa-- -3'
miRNA:   3'- acuC-CACCGUGCGCcAgUCGCAGaac -5'
25685 5' -57.1 NC_005337.1 + 96093 0.66 0.844924
Target:  5'- --cGG-GGCACGCGGgcgCGGCGg---- -3'
miRNA:   3'- acuCCaCCGUGCGCCa--GUCGCagaac -5'
25685 5' -57.1 NC_005337.1 + 77464 0.66 0.844924
Target:  5'- cGuGGUGGCguGCGCGG-CGacGCGUCc-- -3'
miRNA:   3'- aCuCCACCG--UGCGCCaGU--CGCAGaac -5'
25685 5' -57.1 NC_005337.1 + 31642 0.66 0.828383
Target:  5'- cGcGGUGGCAgaucagcgaguCGCGGUCGGgGUa--- -3'
miRNA:   3'- aCuCCACCGU-----------GCGCCAGUCgCAgaac -5'
25685 5' -57.1 NC_005337.1 + 98484 0.66 0.819838
Target:  5'- -cAGG-GGCGCGcCGG-CGGCGUCc-- -3'
miRNA:   3'- acUCCaCCGUGC-GCCaGUCGCAGaac -5'
25685 5' -57.1 NC_005337.1 + 85329 0.66 0.811121
Target:  5'- uUGAGGUacuuCGCGCGGUCGcCGUCg-- -3'
miRNA:   3'- -ACUCCAcc--GUGCGCCAGUcGCAGaac -5'
25685 5' -57.1 NC_005337.1 + 4018 0.67 0.789547
Target:  5'- uUGGGGccaccggugugcaGGUACGCGuGcagCGGCGUCUUGu -3'
miRNA:   3'- -ACUCCa------------CCGUGCGC-Ca--GUCGCAGAAC- -5'
25685 5' -57.1 NC_005337.1 + 91008 0.67 0.78402
Target:  5'- aGcAGGUGGCGCugaggaacaGCGcGUCAGCGgugCUcaUGg -3'
miRNA:   3'- aC-UCCACCGUG---------CGC-CAGUCGCa--GA--AC- -5'
25685 5' -57.1 NC_005337.1 + 5441 0.68 0.746001
Target:  5'- aGAGGa-GCACGCGGUCgAGCaUCUc- -3'
miRNA:   3'- aCUCCacCGUGCGCCAG-UCGcAGAac -5'
25685 5' -57.1 NC_005337.1 + 87411 0.68 0.746001
Target:  5'- cGAGcuUGGUgaacaGCGCcacgucguucacGGUCAGCGUCUUGc -3'
miRNA:   3'- aCUCc-ACCG-----UGCG------------CCAGUCGCAGAAC- -5'
25685 5' -57.1 NC_005337.1 + 122395 0.68 0.746001
Target:  5'- cGGGGcagUGGUACGUGGgCAGCGcCUc- -3'
miRNA:   3'- aCUCC---ACCGUGCGCCaGUCGCaGAac -5'
25685 5' -57.1 NC_005337.1 + 34840 0.68 0.736221
Target:  5'- cGAGGUGGCccacgcCGCGGcUCAGCa----- -3'
miRNA:   3'- aCUCCACCGu-----GCGCC-AGUCGcagaac -5'
25685 5' -57.1 NC_005337.1 + 109378 0.68 0.716397
Target:  5'- gGAGGcgGGCACGCgcgGGUCuGGCGUg--- -3'
miRNA:   3'- aCUCCa-CCGUGCG---CCAG-UCGCAgaac -5'
25685 5' -57.1 NC_005337.1 + 17194 0.68 0.716397
Target:  5'- -----gGGCGCGCGGUagccacauGGCGUCUUGc -3'
miRNA:   3'- acuccaCCGUGCGCCAg-------UCGCAGAAC- -5'
25685 5' -57.1 NC_005337.1 + 100591 0.68 0.716397
Target:  5'- gGAGGUGGCGCccgcCGGccUCGGCGcCUc- -3'
miRNA:   3'- aCUCCACCGUGc---GCC--AGUCGCaGAac -5'
25685 5' -57.1 NC_005337.1 + 86028 0.68 0.705364
Target:  5'- gGAGGcgguccaUGGCG-GCGGUgCAGCGUUUUa -3'
miRNA:   3'- aCUCC-------ACCGUgCGCCA-GUCGCAGAAc -5'
25685 5' -57.1 NC_005337.1 + 127882 0.69 0.686138
Target:  5'- --uGGUGGCGCGCGGcgcCGGCGa---- -3'
miRNA:   3'- acuCCACCGUGCGCCa--GUCGCagaac -5'
25685 5' -57.1 NC_005337.1 + 17341 0.69 0.655471
Target:  5'- uUGAGGUacGGCACGCGcagCAGCaccGUCUg- -3'
miRNA:   3'- -ACUCCA--CCGUGCGCca-GUCG---CAGAac -5'
25685 5' -57.1 NC_005337.1 + 30647 0.7 0.624634
Target:  5'- cGAGGaUGGCGCGCGGcgCGGaGUUgUGg -3'
miRNA:   3'- aCUCC-ACCGUGCGCCa-GUCgCAGaAC- -5'
25685 5' -57.1 NC_005337.1 + 68659 0.71 0.563314
Target:  5'- uUGGGGUGGUugaGCGCGuGcagCAGCGcgcUCUUGg -3'
miRNA:   3'- -ACUCCACCG---UGCGC-Ca--GUCGC---AGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.