Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25685 | 5' | -57.1 | NC_005337.1 | + | 38305 | 0.72 | 0.488265 |
Target: 5'- gGAGG-GGCGCGCGcGUCGagcgcaacgaccgacGCGUCUg- -3' miRNA: 3'- aCUCCaCCGUGCGC-CAGU---------------CGCAGAac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 96093 | 0.66 | 0.844924 |
Target: 5'- --cGG-GGCACGCGGgcgCGGCGg---- -3' miRNA: 3'- acuCCaCCGUGCGCCa--GUCGCagaac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 77464 | 0.66 | 0.844924 |
Target: 5'- cGuGGUGGCguGCGCGG-CGacGCGUCc-- -3' miRNA: 3'- aCuCCACCG--UGCGCCaGU--CGCAGaac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 98484 | 0.66 | 0.819838 |
Target: 5'- -cAGG-GGCGCGcCGG-CGGCGUCc-- -3' miRNA: 3'- acUCCaCCGUGC-GCCaGUCGCAGaac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 85329 | 0.66 | 0.811121 |
Target: 5'- uUGAGGUacuuCGCGCGGUCGcCGUCg-- -3' miRNA: 3'- -ACUCCAcc--GUGCGCCAGUcGCAGaac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 4018 | 0.67 | 0.789547 |
Target: 5'- uUGGGGccaccggugugcaGGUACGCGuGcagCGGCGUCUUGu -3' miRNA: 3'- -ACUCCa------------CCGUGCGC-Ca--GUCGCAGAAC- -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 91008 | 0.67 | 0.78402 |
Target: 5'- aGcAGGUGGCGCugaggaacaGCGcGUCAGCGgugCUcaUGg -3' miRNA: 3'- aC-UCCACCGUG---------CGC-CAGUCGCa--GA--AC- -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 87411 | 0.68 | 0.746001 |
Target: 5'- cGAGcuUGGUgaacaGCGCcacgucguucacGGUCAGCGUCUUGc -3' miRNA: 3'- aCUCc-ACCG-----UGCG------------CCAGUCGCAGAAC- -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 100591 | 0.68 | 0.716397 |
Target: 5'- gGAGGUGGCGCccgcCGGccUCGGCGcCUc- -3' miRNA: 3'- aCUCCACCGUGc---GCC--AGUCGCaGAac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 109378 | 0.68 | 0.716397 |
Target: 5'- gGAGGcgGGCACGCgcgGGUCuGGCGUg--- -3' miRNA: 3'- aCUCCa-CCGUGCG---CCAG-UCGCAgaac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 86028 | 0.68 | 0.705364 |
Target: 5'- gGAGGcgguccaUGGCG-GCGGUgCAGCGUUUUa -3' miRNA: 3'- aCUCC-------ACCGUgCGCCA-GUCGCAGAAc -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 17341 | 0.69 | 0.655471 |
Target: 5'- uUGAGGUacGGCACGCGcagCAGCaccGUCUg- -3' miRNA: 3'- -ACUCCA--CCGUGCGCca-GUCG---CAGAac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 80219 | 0.72 | 0.494031 |
Target: 5'- aUGAGcGcGcGCACGCGGUCGGgGUCg-- -3' miRNA: 3'- -ACUC-CaC-CGUGCGCCAGUCgCAGaac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 17194 | 0.68 | 0.716397 |
Target: 5'- -----gGGCGCGCGGUagccacauGGCGUCUUGc -3' miRNA: 3'- acuccaCCGUGCGCCAg-------UCGCAGAAC- -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 127882 | 0.69 | 0.686138 |
Target: 5'- --uGGUGGCGCGCGGcgcCGGCGa---- -3' miRNA: 3'- acuCCACCGUGCGCCa--GUCGCagaac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 30647 | 0.7 | 0.624634 |
Target: 5'- cGAGGaUGGCGCGCGGcgCGGaGUUgUGg -3' miRNA: 3'- aCUCC-ACCGUGCGCCa-GUCgCAGaAC- -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 68659 | 0.71 | 0.563314 |
Target: 5'- uUGGGGUGGUugaGCGCGuGcagCAGCGcgcUCUUGg -3' miRNA: 3'- -ACUCCACCG---UGCGC-Ca--GUCGC---AGAAC- -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 28153 | 0.75 | 0.337605 |
Target: 5'- aGAGGUcaacGGCACGCGuGUCAGCGa---- -3' miRNA: 3'- aCUCCA----CCGUGCGC-CAGUCGCagaac -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 64289 | 0.77 | 0.261292 |
Target: 5'- aUGAGGU-GCACgGCGGUCgcguccGGCGUCUUGc -3' miRNA: 3'- -ACUCCAcCGUG-CGCCAG------UCGCAGAAC- -5' |
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25685 | 5' | -57.1 | NC_005337.1 | + | 39926 | 0.66 | 0.844924 |
Target: 5'- --cGuGUGGCGCGCGcUgAGCGUCa-- -3' miRNA: 3'- acuC-CACCGUGCGCcAgUCGCAGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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