miRNA display CGI


Results 1 - 20 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 3' -55.7 NC_005337.1 + 95342 0.66 0.89845
Target:  5'- cGCGCCGUGGcgcugcgACACCGGgGagccgucgaugccgaCGAAGCc -3'
miRNA:   3'- uUGUGGCACC-------UGUGGUCgU---------------GCUUCGc -5'
25687 3' -55.7 NC_005337.1 + 43695 0.66 0.896467
Target:  5'- gGACGCCGacGACggACCGGCcgACGAcGGCGa -3'
miRNA:   3'- -UUGUGGCacCUG--UGGUCG--UGCU-UCGC- -5'
25687 3' -55.7 NC_005337.1 + 29117 0.66 0.896467
Target:  5'- cACGCCGUGcaGCGCCAGCAgcaccaUGucGGCGa -3'
miRNA:   3'- uUGUGGCACc-UGUGGUCGU------GCu-UCGC- -5'
25687 3' -55.7 NC_005337.1 + 38295 0.66 0.896467
Target:  5'- aAGCACCGguggagGGGCGC--GCGCGucGAGCGc -3'
miRNA:   3'- -UUGUGGCa-----CCUGUGguCGUGC--UUCGC- -5'
25687 3' -55.7 NC_005337.1 + 26696 0.66 0.896467
Target:  5'- uGC-CCGUGGACAgCA-CGCG-GGCGa -3'
miRNA:   3'- uUGuGGCACCUGUgGUcGUGCuUCGC- -5'
25687 3' -55.7 NC_005337.1 + 41316 0.66 0.896467
Target:  5'- -cCAgCGUGGcguccacgcGCACCAGCACGcuGUa -3'
miRNA:   3'- uuGUgGCACC---------UGUGGUCGUGCuuCGc -5'
25687 3' -55.7 NC_005337.1 + 15473 0.66 0.896467
Target:  5'- -cCACCGacGGcGCGCgCGGCACGAcGGCGc -3'
miRNA:   3'- uuGUGGCa-CC-UGUG-GUCGUGCU-UCGC- -5'
25687 3' -55.7 NC_005337.1 + 127503 0.66 0.896467
Target:  5'- cGACACCGgcgGGaACACCGcgcuGCACuacauGGCGa -3'
miRNA:   3'- -UUGUGGCa--CC-UGUGGU----CGUGcu---UCGC- -5'
25687 3' -55.7 NC_005337.1 + 68299 0.66 0.896467
Target:  5'- cGGCGgCGUGGACGCgCGuGCcCGAggagGGCGg -3'
miRNA:   3'- -UUGUgGCACCUGUG-GU-CGuGCU----UCGC- -5'
25687 3' -55.7 NC_005337.1 + 2417 0.66 0.895801
Target:  5'- -uCGCaCGUGGAgCGCgAGCACGAgauggucAGCu -3'
miRNA:   3'- uuGUG-GCACCU-GUGgUCGUGCU-------UCGc -5'
25687 3' -55.7 NC_005337.1 + 9765 0.66 0.895801
Target:  5'- cGGCGCCGgguuGGCACCGGCcuccuCGAugaacagGGCGg -3'
miRNA:   3'- -UUGUGGCac--CUGUGGUCGu----GCU-------UCGC- -5'
25687 3' -55.7 NC_005337.1 + 101529 0.66 0.893788
Target:  5'- gGAgGCCGUGGACgugaccgccGCCAGCGuggacuuccucaaGGAGCu -3'
miRNA:   3'- -UUgUGGCACCUG---------UGGUCGUg------------CUUCGc -5'
25687 3' -55.7 NC_005337.1 + 2696 0.66 0.889699
Target:  5'- gAGCugCGgcguggGGACGCggaggAGCACGAGcGCGa -3'
miRNA:   3'- -UUGugGCa-----CCUGUGg----UCGUGCUU-CGC- -5'
25687 3' -55.7 NC_005337.1 + 35325 0.66 0.889699
Target:  5'- cGGCGCCGcGGAC-CCaggcgugcguGGCGcCGAAGUGg -3'
miRNA:   3'- -UUGUGGCaCCUGuGG----------UCGU-GCUUCGC- -5'
25687 3' -55.7 NC_005337.1 + 58896 0.66 0.889699
Target:  5'- uGCACuuCGUGGugGCgCGGCAgGAcuccGGCGc -3'
miRNA:   3'- uUGUG--GCACCugUG-GUCGUgCU----UCGC- -5'
25687 3' -55.7 NC_005337.1 + 84086 0.66 0.889699
Target:  5'- cGCGCCGcagagcgcGGACACgGGCGCGGucGCc -3'
miRNA:   3'- uUGUGGCa-------CCUGUGgUCGUGCUu-CGc -5'
25687 3' -55.7 NC_005337.1 + 43527 0.66 0.889699
Target:  5'- cAGCuCCGUGGaggagcGCAuCCAGCACuGGAcGCGg -3'
miRNA:   3'- -UUGuGGCACC------UGU-GGUCGUG-CUU-CGC- -5'
25687 3' -55.7 NC_005337.1 + 98775 0.66 0.889699
Target:  5'- cAGCGCCGUGGA--CCGGUACaacGCGc -3'
miRNA:   3'- -UUGUGGCACCUguGGUCGUGcuuCGC- -5'
25687 3' -55.7 NC_005337.1 + 99452 0.66 0.889699
Target:  5'- -cCACCucGUGGACGCgCGcguGCGCGAGGgCGu -3'
miRNA:   3'- uuGUGG--CACCUGUG-GU---CGUGCUUC-GC- -5'
25687 3' -55.7 NC_005337.1 + 42167 0.66 0.889699
Target:  5'- gAGCACCGacucGGACACCGcguccagcuGCGCGuccAGCc -3'
miRNA:   3'- -UUGUGGCa---CCUGUGGU---------CGUGCu--UCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.