miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 37407 0.67 0.654494
Target:  5'- cCGCGCAuccGCGCGgaguCGCG-GAgC-CGGGGg -3'
miRNA:   3'- -GCGCGU---CGCGC----GCGCaCUaGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 989 0.67 0.654494
Target:  5'- gGCGCGGCGCGCG-GaGGg--CGGGc -3'
miRNA:   3'- gCGCGUCGCGCGCgCaCUagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 9369 0.67 0.644633
Target:  5'- gCGCGCuGCGCGUucgagccagacgGCGaGGUCcUCGGaGGc -3'
miRNA:   3'- -GCGCGuCGCGCG------------CGCaCUAG-AGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 35258 0.67 0.615023
Target:  5'- aGCGCcucgcaGGC-CGCGCGcac-CUCGGGGg -3'
miRNA:   3'- gCGCG------UCGcGCGCGCacuaGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 111532 0.67 0.62489
Target:  5'- cCGCGCucCGC-CGCGUGcAggUCGGGGu -3'
miRNA:   3'- -GCGCGucGCGcGCGCAC-UagAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 12708 0.67 0.62489
Target:  5'- gGCGUccGCGCGCGCGccGcgCUCGaGGa -3'
miRNA:   3'- gCGCGu-CGCGCGCGCa-CuaGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 122818 0.67 0.62489
Target:  5'- -cCGCAGCGUGCGCGUccgcguGAUCgugaCGGa- -3'
miRNA:   3'- gcGCGUCGCGCGCGCA------CUAGa---GCCcc -5'
25687 5' -60.9 NC_005337.1 + 104564 0.67 0.644633
Target:  5'- gCGCGCGuGCGCgccucGCGCGUccguccGGUCgUCGGcGGc -3'
miRNA:   3'- -GCGCGU-CGCG-----CGCGCA------CUAG-AGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 130648 0.67 0.618969
Target:  5'- gGCGCGGaCGUGCGCGcGAgggacgUCUacggcgcuacgccgcUGGGGg -3'
miRNA:   3'- gCGCGUC-GCGCGCGCaCU------AGA---------------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 21372 0.67 0.605168
Target:  5'- uGCGCAGaucaGCGCccaagaCGcGAUCUCGGcGGc -3'
miRNA:   3'- gCGCGUCg---CGCGc-----GCaCUAGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 83975 0.67 0.605168
Target:  5'- aGCgGCGGCGCGgGCGggcacGUCUgggccugcaCGGGGc -3'
miRNA:   3'- gCG-CGUCGCGCgCGCac---UAGA---------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 94789 0.67 0.605168
Target:  5'- aGCaGCAGCGCGCGCGc-GUCgccggcaCGGaGGc -3'
miRNA:   3'- gCG-CGUCGCGCGCGCacUAGa------GCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 80204 0.67 0.605168
Target:  5'- uCGCGCgucucguugaugAGCGCGCGCacgcggUCGGGGu -3'
miRNA:   3'- -GCGCG------------UCGCGCGCGcacuagAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 69295 0.67 0.615023
Target:  5'- aCGgGCAGUuCGCGCGgGAgaaggccuUCUCGGuGGu -3'
miRNA:   3'- -GCgCGUCGcGCGCGCaCU--------AGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 18713 0.67 0.615023
Target:  5'- aCGCGgcCAGuCGCGCGCuGUG--CUCGGaGGa -3'
miRNA:   3'- -GCGC--GUC-GCGCGCG-CACuaGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 859 0.67 0.654494
Target:  5'- gCGgGCAGCGCGgGCGcGG-C-CGGGcGg -3'
miRNA:   3'- -GCgCGUCGCGCgCGCaCUaGaGCCC-C- -5'
25687 5' -60.9 NC_005337.1 + 61239 0.67 0.644633
Target:  5'- aGcCGCAGCGUGCccucCGUGAcCUCGacGGGc -3'
miRNA:   3'- gC-GCGUCGCGCGc---GCACUaGAGC--CCC- -5'
25687 5' -60.9 NC_005337.1 + 42752 0.67 0.653509
Target:  5'- gCGUGCGGUGCgggucccGCGCGUucgugugCUCGGGcGg -3'
miRNA:   3'- -GCGCGUCGCG-------CGCGCAcua----GAGCCC-C- -5'
25687 5' -60.9 NC_005337.1 + 859 0.67 0.654494
Target:  5'- gCGgGCAGCGCGgGCGcGG-C-CGGGcGg -3'
miRNA:   3'- -GCgCGUCGCGCgCGCaCUaGaGCCC-C- -5'
25687 5' -60.9 NC_005337.1 + 989 0.67 0.654494
Target:  5'- gGCGCGGCGCGCG-GaGGg--CGGGc -3'
miRNA:   3'- gCGCGUCGCGCGCgCaCUagaGCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.