Results 81 - 100 of 136 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 36896 | 0.69 | 0.490043 |
Target: 5'- uCGCGCGGCGCG-GCGUGGcCgUCaGGa -3' miRNA: 3'- -GCGCGUCGCGCgCGCACUaG-AGcCCc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 120463 | 0.69 | 0.499299 |
Target: 5'- gCGCGCucgAGCGCGCGCuG-GAUCgcgCGGa- -3' miRNA: 3'- -GCGCG---UCGCGCGCG-CaCUAGa--GCCcc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 10237 | 0.69 | 0.499299 |
Target: 5'- cCGCgGCAG-GCGCGCGgccuUCgCGGGGc -3' miRNA: 3'- -GCG-CGUCgCGCGCGCacu-AGaGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 49098 | 0.69 | 0.518038 |
Target: 5'- uCGCGCAGCucGUGCGCGaGGUCaUCGacucgcuccgcGGGa -3' miRNA: 3'- -GCGCGUCG--CGCGCGCaCUAG-AGC-----------CCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 53592 | 0.69 | 0.518038 |
Target: 5'- uCGCGCAcauGCGCGCGCGgaagcgcgccgcgcaGAUCcaggaguUCGGGc -3' miRNA: 3'- -GCGCGU---CGCGCGCGCa--------------CUAG-------AGCCCc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 80270 | 0.69 | 0.518038 |
Target: 5'- uGCGCGuGCGCGaCGCGgUGAUC-CGGc- -3' miRNA: 3'- gCGCGU-CGCGC-GCGC-ACUAGaGCCcc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 109179 | 0.69 | 0.490043 |
Target: 5'- cCGCGCcGCGCGgGCG-GAgCUCGGc- -3' miRNA: 3'- -GCGCGuCGCGCgCGCaCUaGAGCCcc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 67888 | 0.69 | 0.518038 |
Target: 5'- gGCGCAGCGCGUGCucGAag-CGGuGGa -3' miRNA: 3'- gCGCGUCGCGCGCGcaCUagaGCC-CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 47314 | 0.69 | 0.518038 |
Target: 5'- gCGCGUGGUcauguucgagGCGCGCGUGGUCaUGGa- -3' miRNA: 3'- -GCGCGUCG----------CGCGCGCACUAGaGCCcc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 64929 | 0.69 | 0.518038 |
Target: 5'- cCGCGCgggaaAGCGCGCGCcGUGAUCcgCGu-- -3' miRNA: 3'- -GCGCG-----UCGCGCGCG-CACUAGa-GCccc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 67744 | 0.69 | 0.518038 |
Target: 5'- gGCGCGGCGCGCaGCuccagcGUCUCGGccGGc -3' miRNA: 3'- gCGCGUCGCGCG-CGcac---UAGAGCC--CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 121687 | 0.69 | 0.518038 |
Target: 5'- cCGCGCGG-GCGCcaaCGUGAacgCgcgCGGGGa -3' miRNA: 3'- -GCGCGUCgCGCGc--GCACUa--Ga--GCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 50196 | 0.69 | 0.53705 |
Target: 5'- cCGCGCucuGCgGCGCGCGUcugCacaCGGGGa -3' miRNA: 3'- -GCGCGu--CG-CGCGCGCAcuaGa--GCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 127887 | 0.69 | 0.53705 |
Target: 5'- gCGCGCGGCGCcggcgaGCGCGUG----CGGGc -3' miRNA: 3'- -GCGCGUCGCG------CGCGCACuagaGCCCc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 28495 | 0.7 | 0.480867 |
Target: 5'- cCGCGCGGCGCGCG-GUcGcgCggcacugcgUGGGGc -3' miRNA: 3'- -GCGCGUCGCGCGCgCA-CuaGa--------GCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 74937 | 0.7 | 0.480867 |
Target: 5'- gCGCGCGGC-CGCGCG-GAUgCggugcUGGGGc -3' miRNA: 3'- -GCGCGUCGcGCGCGCaCUA-Ga----GCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 56130 | 0.7 | 0.471776 |
Target: 5'- uCGC-CAGCGUGCGCG-GcgUgcagCGGGGc -3' miRNA: 3'- -GCGcGUCGCGCGCGCaCuaGa---GCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 12585 | 0.7 | 0.466364 |
Target: 5'- gCGCGCguucacguuGGCGCccGCGCG-GAUgagcagguccacgacCUCGGGGg -3' miRNA: 3'- -GCGCG---------UCGCG--CGCGCaCUA---------------GAGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 119777 | 0.7 | 0.462773 |
Target: 5'- aCGCauGUGGC-CGCGCGUGGUCggugCGGuGGu -3' miRNA: 3'- -GCG--CGUCGcGCGCGCACUAGa---GCC-CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 89959 | 0.7 | 0.445043 |
Target: 5'- gGCGCGGC-CGCaGCacGcgCUCGGGGg -3' miRNA: 3'- gCGCGUCGcGCG-CGcaCuaGAGCCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home