Results 101 - 120 of 136 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 9658 | 0.7 | 0.436321 |
Target: 5'- --aGCAGCcCGCGCGUGAgCUCGGu- -3' miRNA: 3'- gcgCGUCGcGCGCGCACUaGAGCCcc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 89959 | 0.7 | 0.445043 |
Target: 5'- gGCGCGGC-CGCaGCacGcgCUCGGGGg -3' miRNA: 3'- gCGCGUCGcGCG-CGcaCuaGAGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 37218 | 0.7 | 0.480867 |
Target: 5'- gCGCGCcGCGCGUGCGUGG-CgaugaGGuGGc -3' miRNA: 3'- -GCGCGuCGCGCGCGCACUaGag---CC-CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 56130 | 0.7 | 0.471776 |
Target: 5'- uCGC-CAGCGUGCGCG-GcgUgcagCGGGGc -3' miRNA: 3'- -GCGcGUCGCGCGCGCaCuaGa---GCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 12585 | 0.7 | 0.466364 |
Target: 5'- gCGCGCguucacguuGGCGCccGCGCG-GAUgagcagguccacgacCUCGGGGg -3' miRNA: 3'- -GCGCG---------UCGCG--CGCGCaCUA---------------GAGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 119777 | 0.7 | 0.462773 |
Target: 5'- aCGCauGUGGC-CGCGCGUGGUCggugCGGuGGu -3' miRNA: 3'- -GCG--CGUCGcGCGCGCACUAGa---GCC-CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 73411 | 0.71 | 0.4277 |
Target: 5'- -cCGCAGCuCGUGgaCGUGGUgCUCGGGGa -3' miRNA: 3'- gcGCGUCGcGCGC--GCACUA-GAGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 122377 | 0.71 | 0.419179 |
Target: 5'- aCGCGCAuguGCGUGCGCGaGGUCgugcugcgCGGcGGc -3' miRNA: 3'- -GCGCGU---CGCGCGCGCaCUAGa-------GCC-CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 128321 | 0.71 | 0.410762 |
Target: 5'- gCGCGCGGCGCGaGCGcGAcugCUCGGu- -3' miRNA: 3'- -GCGCGUCGCGCgCGCaCUa--GAGCCcc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 13821 | 0.71 | 0.386153 |
Target: 5'- gCGCGCucgAGCGCGCcccGCaggGA-CUCGGGGg -3' miRNA: 3'- -GCGCG---UCGCGCG---CGca-CUaGAGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 38479 | 0.71 | 0.382946 |
Target: 5'- gCGCGCcgGGCGCGCGCGUcgccgagcuggccGAcgacgucgccgcgaUCgCGGGGa -3' miRNA: 3'- -GCGCG--UCGCGCGCGCA-------------CU--------------AGaGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 84564 | 0.71 | 0.4277 |
Target: 5'- aCGCGCGGCa-GCGCGUGAcCgCGaGGGu -3' miRNA: 3'- -GCGCGUCGcgCGCGCACUaGaGC-CCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 109474 | 0.71 | 0.402451 |
Target: 5'- gCGCGCGuGgGCGCGCuuccgGAUCUCGGcGa -3' miRNA: 3'- -GCGCGU-CgCGCGCGca---CUAGAGCC-Cc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 25113 | 0.71 | 0.419179 |
Target: 5'- gGCGCGGCGCGCGCGgacgcgUGAauaUUCGGc- -3' miRNA: 3'- gCGCGUCGCGCGCGC------ACUa--GAGCCcc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 102947 | 0.71 | 0.419179 |
Target: 5'- gGUGCAGUGCGagaacacCGUGGUCgUGGGGa -3' miRNA: 3'- gCGCGUCGCGCgc-----GCACUAGaGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 74379 | 0.71 | 0.4277 |
Target: 5'- gGCGCAGCuGCGCGagaCGUacAUCUCcGGGGc -3' miRNA: 3'- gCGCGUCG-CGCGC---GCAc-UAGAG-CCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 4501 | 0.71 | 0.391808 |
Target: 5'- aCGUGCAGCgGCGUGUucccgaacacguugGUGGUCaUGGGGu -3' miRNA: 3'- -GCGCGUCG-CGCGCG--------------CACUAGaGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 40539 | 0.71 | 0.419179 |
Target: 5'- cCGcCGCGGCGCGCG-GUGGugcgguUCUCGaGGa -3' miRNA: 3'- -GC-GCGUCGCGCGCgCACU------AGAGC-CCc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 5574 | 0.72 | 0.339944 |
Target: 5'- gCGCGcCAGCcgcgucgccaGCGCGCGUGccCggCGGGGg -3' miRNA: 3'- -GCGC-GUCG----------CGCGCGCACuaGa-GCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 68638 | 0.72 | 0.362538 |
Target: 5'- aGCGUGGCGgagGgGCG-GAUCUUGGGGu -3' miRNA: 3'- gCGCGUCGCg--CgCGCaCUAGAGCCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home