Results 41 - 60 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 126435 | 0.7 | 0.469066 |
Target: 5'- gGCGC-GCGUGCGCGUGuaccaccgcgcgcuGUCgCGGaGGa -3' miRNA: 3'- gCGCGuCGCGCGCGCAC--------------UAGaGCC-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 74937 | 0.7 | 0.480867 |
Target: 5'- gCGCGCGGC-CGCGCG-GAUgCggugcUGGGGc -3' miRNA: 3'- -GCGCGUCGcGCGCGCaCUA-Ga----GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 67888 | 0.69 | 0.518038 |
Target: 5'- gGCGCAGCGCGUGCucGAag-CGGuGGa -3' miRNA: 3'- gCGCGUCGCGCGCGcaCUagaGCC-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 109179 | 0.69 | 0.490043 |
Target: 5'- cCGCGCcGCGCGgGCG-GAgCUCGGc- -3' miRNA: 3'- -GCGCGuCGCGCgCGCaCUaGAGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 80270 | 0.69 | 0.518038 |
Target: 5'- uGCGCGuGCGCGaCGCGgUGAUC-CGGc- -3' miRNA: 3'- gCGCGU-CGCGC-GCGC-ACUAGaGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 47314 | 0.69 | 0.518038 |
Target: 5'- gCGCGUGGUcauguucgagGCGCGCGUGGUCaUGGa- -3' miRNA: 3'- -GCGCGUCG----------CGCGCGCACUAGaGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 121687 | 0.69 | 0.518038 |
Target: 5'- cCGCGCGG-GCGCcaaCGUGAacgCgcgCGGGGa -3' miRNA: 3'- -GCGCGUCgCGCGc--GCACUa--Ga--GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 67744 | 0.69 | 0.518038 |
Target: 5'- gGCGCGGCGCGCaGCuccagcGUCUCGGccGGc -3' miRNA: 3'- gCGCGUCGCGCG-CGcac---UAGAGCC--CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 127887 | 0.69 | 0.53705 |
Target: 5'- gCGCGCGGCGCcggcgaGCGCGUG----CGGGc -3' miRNA: 3'- -GCGCGUCGCG------CGCGCACuagaGCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 49098 | 0.69 | 0.518038 |
Target: 5'- uCGCGCAGCucGUGCGCGaGGUCaUCGacucgcuccgcGGGa -3' miRNA: 3'- -GCGCGUCG--CGCGCGCaCUAG-AGC-----------CCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 64929 | 0.69 | 0.518038 |
Target: 5'- cCGCGCgggaaAGCGCGCGCcGUGAUCcgCGu-- -3' miRNA: 3'- -GCGCG-----UCGCGCGCG-CACUAGa-GCccc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 10237 | 0.69 | 0.499299 |
Target: 5'- cCGCgGCAG-GCGCGCGgccuUCgCGGGGc -3' miRNA: 3'- -GCG-CGUCgCGCGCGCacu-AGaGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 36896 | 0.69 | 0.490043 |
Target: 5'- uCGCGCGGCGCG-GCGUGGcCgUCaGGa -3' miRNA: 3'- -GCGCGUCGCGCgCGCACUaG-AGcCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 120463 | 0.69 | 0.499299 |
Target: 5'- gCGCGCucgAGCGCGCGCuG-GAUCgcgCGGa- -3' miRNA: 3'- -GCGCG---UCGCGCGCG-CaCUAGa--GCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 53592 | 0.69 | 0.518038 |
Target: 5'- uCGCGCAcauGCGCGCGCGgaagcgcgccgcgcaGAUCcaggaguUCGGGc -3' miRNA: 3'- -GCGCGU---CGCGCGCGCa--------------CUAG-------AGCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 50196 | 0.69 | 0.53705 |
Target: 5'- cCGCGCucuGCgGCGCGCGUcugCacaCGGGGa -3' miRNA: 3'- -GCGCGu--CG-CGCGCGCAcuaGa--GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 60274 | 0.68 | 0.556298 |
Target: 5'- gGgGCAgGCGCGgGgGUGGgagugggCUUGGGGu -3' miRNA: 3'- gCgCGU-CGCGCgCgCACUa------GAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 1127 | 0.68 | 0.57574 |
Target: 5'- aGcCGCAGCaCGCGCGcGAccagcUCcgCGGGGa -3' miRNA: 3'- gC-GCGUCGcGCGCGCaCU-----AGa-GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 39647 | 0.68 | 0.58552 |
Target: 5'- aCGCaGCGGCGCggccgcgugggGCGCGUGGcCcCGGGc -3' miRNA: 3'- -GCG-CGUCGCG-----------CGCGCACUaGaGCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 97776 | 0.68 | 0.559203 |
Target: 5'- gCGCGCuGCGCGagaaggaccgcuuCGUGUGGuguccacgguguucuUCUCGGGc -3' miRNA: 3'- -GCGCGuCGCGC-------------GCGCACU---------------AGAGCCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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