miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 74937 0.7 0.480867
Target:  5'- gCGCGCGGC-CGCGCG-GAUgCggugcUGGGGc -3'
miRNA:   3'- -GCGCGUCGcGCGCGCaCUA-Ga----GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 37218 0.7 0.480867
Target:  5'- gCGCGCcGCGCGUGCGUGG-CgaugaGGuGGc -3'
miRNA:   3'- -GCGCGuCGCGCGCGCACUaGag---CC-CC- -5'
25687 5' -60.9 NC_005337.1 + 36896 0.69 0.490043
Target:  5'- uCGCGCGGCGCG-GCGUGGcCgUCaGGa -3'
miRNA:   3'- -GCGCGUCGCGCgCGCACUaG-AGcCCc -5'
25687 5' -60.9 NC_005337.1 + 109179 0.69 0.490043
Target:  5'- cCGCGCcGCGCGgGCG-GAgCUCGGc- -3'
miRNA:   3'- -GCGCGuCGCGCgCGCaCUaGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 120463 0.69 0.499299
Target:  5'- gCGCGCucgAGCGCGCGCuG-GAUCgcgCGGa- -3'
miRNA:   3'- -GCGCG---UCGCGCGCG-CaCUAGa--GCCcc -5'
25687 5' -60.9 NC_005337.1 + 10237 0.69 0.499299
Target:  5'- cCGCgGCAG-GCGCGCGgccuUCgCGGGGc -3'
miRNA:   3'- -GCG-CGUCgCGCGCGCacu-AGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 67888 0.69 0.518038
Target:  5'- gGCGCAGCGCGUGCucGAag-CGGuGGa -3'
miRNA:   3'- gCGCGUCGCGCGCGcaCUagaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 67744 0.69 0.518038
Target:  5'- gGCGCGGCGCGCaGCuccagcGUCUCGGccGGc -3'
miRNA:   3'- gCGCGUCGCGCG-CGcac---UAGAGCC--CC- -5'
25687 5' -60.9 NC_005337.1 + 121687 0.69 0.518038
Target:  5'- cCGCGCGG-GCGCcaaCGUGAacgCgcgCGGGGa -3'
miRNA:   3'- -GCGCGUCgCGCGc--GCACUa--Ga--GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 47314 0.69 0.518038
Target:  5'- gCGCGUGGUcauguucgagGCGCGCGUGGUCaUGGa- -3'
miRNA:   3'- -GCGCGUCG----------CGCGCGCACUAGaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 64929 0.69 0.518038
Target:  5'- cCGCGCgggaaAGCGCGCGCcGUGAUCcgCGu-- -3'
miRNA:   3'- -GCGCG-----UCGCGCGCG-CACUAGa-GCccc -5'
25687 5' -60.9 NC_005337.1 + 49098 0.69 0.518038
Target:  5'- uCGCGCAGCucGUGCGCGaGGUCaUCGacucgcuccgcGGGa -3'
miRNA:   3'- -GCGCGUCG--CGCGCGCaCUAG-AGC-----------CCC- -5'
25687 5' -60.9 NC_005337.1 + 53592 0.69 0.518038
Target:  5'- uCGCGCAcauGCGCGCGCGgaagcgcgccgcgcaGAUCcaggaguUCGGGc -3'
miRNA:   3'- -GCGCGU---CGCGCGCGCa--------------CUAG-------AGCCCc -5'
25687 5' -60.9 NC_005337.1 + 80270 0.69 0.518038
Target:  5'- uGCGCGuGCGCGaCGCGgUGAUC-CGGc- -3'
miRNA:   3'- gCGCGU-CGCGC-GCGC-ACUAGaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 50196 0.69 0.53705
Target:  5'- cCGCGCucuGCgGCGCGCGUcugCacaCGGGGa -3'
miRNA:   3'- -GCGCGu--CG-CGCGCGCAcuaGa--GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 127887 0.69 0.53705
Target:  5'- gCGCGCGGCGCcggcgaGCGCGUG----CGGGc -3'
miRNA:   3'- -GCGCGUCGCG------CGCGCACuagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 45433 0.68 0.546647
Target:  5'- aGCGCAGCuGCaucacguacagGCGguaCGUGAUCUCGGuGa -3'
miRNA:   3'- gCGCGUCG-CG-----------CGC---GCACUAGAGCC-Cc -5'
25687 5' -60.9 NC_005337.1 + 58164 0.68 0.556298
Target:  5'- gCGCGCaAGCGCGUGCGcaUGAUgUaCGuGGa -3'
miRNA:   3'- -GCGCG-UCGCGCGCGC--ACUAgA-GC-CCc -5'
25687 5' -60.9 NC_005337.1 + 60274 0.68 0.556298
Target:  5'- gGgGCAgGCGCGgGgGUGGgagugggCUUGGGGu -3'
miRNA:   3'- gCgCGU-CGCGCgCgCACUa------GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 97776 0.68 0.559203
Target:  5'- gCGCGCuGCGCGagaaggaccgcuuCGUGUGGuguccacgguguucuUCUCGGGc -3'
miRNA:   3'- -GCGCGuCGCGC-------------GCGCACU---------------AGAGCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.