miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 57276 0.68 0.565997
Target:  5'- cCGCGCggggccGGCGCGCGCGgcugcGGcgccgcUCUCGGa- -3'
miRNA:   3'- -GCGCG------UCGCGCGCGCa----CU------AGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 53850 0.68 0.574764
Target:  5'- gGCGCuGCGCGcCGCGgacggcuccugcUGGUUcugcaagcaggcgUCGGGGc -3'
miRNA:   3'- gCGCGuCGCGC-GCGC------------ACUAG-------------AGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 67325 0.68 0.57574
Target:  5'- gCGCGCucgaucGCGCGCGCGUccgGGUC-CGuGGc -3'
miRNA:   3'- -GCGCGu-----CGCGCGCGCA---CUAGaGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 1127 0.68 0.57574
Target:  5'- aGcCGCAGCaCGCGCGcGAccagcUCcgCGGGGa -3'
miRNA:   3'- gC-GCGUCGcGCGCGCaCU-----AGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 1127 0.68 0.57574
Target:  5'- aGcCGCAGCaCGCGCGcGAccagcUCcgCGGGGa -3'
miRNA:   3'- gC-GCGUCGcGCGCGCaCU-----AGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 25356 0.68 0.58552
Target:  5'- aCGCGCGGaagaagugGCGCuGUGUGAUCUUuaaGGGc -3'
miRNA:   3'- -GCGCGUCg-------CGCG-CGCACUAGAG---CCCc -5'
25687 5' -60.9 NC_005337.1 + 73457 0.68 0.58552
Target:  5'- uCGCGCGGCgGUGcCGCGUGcccgCGGaGGa -3'
miRNA:   3'- -GCGCGUCG-CGC-GCGCACuagaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 39647 0.68 0.58552
Target:  5'- aCGCaGCGGCGCggccgcgugggGCGCGUGGcCcCGGGc -3'
miRNA:   3'- -GCG-CGUCGCG-----------CGCGCACUaGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 39925 0.68 0.58552
Target:  5'- aCGUGUGGCGCGCGC-UGAgcgucacgugcuUCaUCGuGGGc -3'
miRNA:   3'- -GCGCGUCGCGCGCGcACU------------AG-AGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 63417 0.68 0.58552
Target:  5'- gCGCGCucguacAGCGCGCgguucuccGCGU--UCUCGGGc -3'
miRNA:   3'- -GCGCG------UCGCGCG--------CGCAcuAGAGCCCc -5'
25687 5' -60.9 NC_005337.1 + 98723 0.68 0.595332
Target:  5'- uCGCGCGGCGCccuGCGCGUGcugaccGUCaUGGa- -3'
miRNA:   3'- -GCGCGUCGCG---CGCGCAC------UAGaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 108897 0.68 0.595332
Target:  5'- gGCgGCAGCGaGCGCGUGAgcaaGGGc -3'
miRNA:   3'- gCG-CGUCGCgCGCGCACUagagCCCc -5'
25687 5' -60.9 NC_005337.1 + 10445 0.68 0.595332
Target:  5'- gGCGguGCGCGCGuCGUGcgC-CaGGa -3'
miRNA:   3'- gCGCguCGCGCGC-GCACuaGaGcCCc -5'
25687 5' -60.9 NC_005337.1 + 64026 0.68 0.595332
Target:  5'- gCGCGCAGCGCGUgGCGUaGUCgaugacgagCGGc- -3'
miRNA:   3'- -GCGCGUCGCGCG-CGCAcUAGa--------GCCcc -5'
25687 5' -60.9 NC_005337.1 + 21372 0.67 0.605168
Target:  5'- uGCGCAGaucaGCGCccaagaCGcGAUCUCGGcGGc -3'
miRNA:   3'- gCGCGUCg---CGCGc-----GCaCUAGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 83975 0.67 0.605168
Target:  5'- aGCgGCGGCGCGgGCGggcacGUCUgggccugcaCGGGGc -3'
miRNA:   3'- gCG-CGUCGCGCgCGCac---UAGA---------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 94789 0.67 0.605168
Target:  5'- aGCaGCAGCGCGCGCGc-GUCgccggcaCGGaGGc -3'
miRNA:   3'- gCG-CGUCGCGCGCGCacUAGa------GCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 80204 0.67 0.605168
Target:  5'- uCGCGCgucucguugaugAGCGCGCGCacgcggUCGGGGu -3'
miRNA:   3'- -GCGCG------------UCGCGCGCGcacuagAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 33604 0.67 0.605168
Target:  5'- gCGCGCGGCGCGaacgcgGCGUGGUucacgaugugCUUGGu- -3'
miRNA:   3'- -GCGCGUCGCGCg-----CGCACUA----------GAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 69295 0.67 0.615023
Target:  5'- aCGgGCAGUuCGCGCGgGAgaaggccuUCUCGGuGGu -3'
miRNA:   3'- -GCgCGUCGcGCGCGCaCU--------AGAGCC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.