Results 61 - 80 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 83975 | 0.67 | 0.605168 |
Target: 5'- aGCgGCGGCGCGgGCGggcacGUCUgggccugcaCGGGGc -3' miRNA: 3'- gCG-CGUCGCGCgCGCac---UAGA---------GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 21372 | 0.67 | 0.605168 |
Target: 5'- uGCGCAGaucaGCGCccaagaCGcGAUCUCGGcGGc -3' miRNA: 3'- gCGCGUCg---CGCGc-----GCaCUAGAGCC-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 64026 | 0.68 | 0.595332 |
Target: 5'- gCGCGCAGCGCGUgGCGUaGUCgaugacgagCGGc- -3' miRNA: 3'- -GCGCGUCGCGCG-CGCAcUAGa--------GCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 98723 | 0.68 | 0.595332 |
Target: 5'- uCGCGCGGCGCccuGCGCGUGcugaccGUCaUGGa- -3' miRNA: 3'- -GCGCGUCGCG---CGCGCAC------UAGaGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 108897 | 0.68 | 0.595332 |
Target: 5'- gGCgGCAGCGaGCGCGUGAgcaaGGGc -3' miRNA: 3'- gCG-CGUCGCgCGCGCACUagagCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 10445 | 0.68 | 0.595332 |
Target: 5'- gGCGguGCGCGCGuCGUGcgC-CaGGa -3' miRNA: 3'- gCGCguCGCGCGC-GCACuaGaGcCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 25356 | 0.68 | 0.58552 |
Target: 5'- aCGCGCGGaagaagugGCGCuGUGUGAUCUUuaaGGGc -3' miRNA: 3'- -GCGCGUCg-------CGCG-CGCACUAGAG---CCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 63417 | 0.68 | 0.58552 |
Target: 5'- gCGCGCucguacAGCGCGCgguucuccGCGU--UCUCGGGc -3' miRNA: 3'- -GCGCG------UCGCGCG--------CGCAcuAGAGCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 39925 | 0.68 | 0.58552 |
Target: 5'- aCGUGUGGCGCGCGC-UGAgcgucacgugcuUCaUCGuGGGc -3' miRNA: 3'- -GCGCGUCGCGCGCGcACU------------AG-AGC-CCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 39647 | 0.68 | 0.58552 |
Target: 5'- aCGCaGCGGCGCggccgcgugggGCGCGUGGcCcCGGGc -3' miRNA: 3'- -GCG-CGUCGCG-----------CGCGCACUaGaGCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 73457 | 0.68 | 0.58552 |
Target: 5'- uCGCGCGGCgGUGcCGCGUGcccgCGGaGGa -3' miRNA: 3'- -GCGCGUCG-CGC-GCGCACuagaGCC-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 67325 | 0.68 | 0.57574 |
Target: 5'- gCGCGCucgaucGCGCGCGCGUccgGGUC-CGuGGc -3' miRNA: 3'- -GCGCGu-----CGCGCGCGCA---CUAGaGC-CCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 1127 | 0.68 | 0.57574 |
Target: 5'- aGcCGCAGCaCGCGCGcGAccagcUCcgCGGGGa -3' miRNA: 3'- gC-GCGUCGcGCGCGCaCU-----AGa-GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 1127 | 0.68 | 0.57574 |
Target: 5'- aGcCGCAGCaCGCGCGcGAccagcUCcgCGGGGa -3' miRNA: 3'- gC-GCGUCGcGCGCGCaCU-----AGa-GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 53850 | 0.68 | 0.574764 |
Target: 5'- gGCGCuGCGCGcCGCGgacggcuccugcUGGUUcugcaagcaggcgUCGGGGc -3' miRNA: 3'- gCGCGuCGCGC-GCGC------------ACUAG-------------AGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 57276 | 0.68 | 0.565997 |
Target: 5'- cCGCGCggggccGGCGCGCGCGgcugcGGcgccgcUCUCGGa- -3' miRNA: 3'- -GCGCG------UCGCGCGCGCa----CU------AGAGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 97776 | 0.68 | 0.559203 |
Target: 5'- gCGCGCuGCGCGagaaggaccgcuuCGUGUGGuguccacgguguucuUCUCGGGc -3' miRNA: 3'- -GCGCGuCGCGC-------------GCGCACU---------------AGAGCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 58164 | 0.68 | 0.556298 |
Target: 5'- gCGCGCaAGCGCGUGCGcaUGAUgUaCGuGGa -3' miRNA: 3'- -GCGCG-UCGCGCGCGC--ACUAgA-GC-CCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 60274 | 0.68 | 0.556298 |
Target: 5'- gGgGCAgGCGCGgGgGUGGgagugggCUUGGGGu -3' miRNA: 3'- gCgCGU-CGCGCgCgCACUa------GAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 45433 | 0.68 | 0.546647 |
Target: 5'- aGCGCAGCuGCaucacguacagGCGguaCGUGAUCUCGGuGa -3' miRNA: 3'- gCGCGUCG-CG-----------CGC---GCACUAGAGCC-Cc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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