miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 56130 0.7 0.471776
Target:  5'- uCGC-CAGCGUGCGCG-GcgUgcagCGGGGc -3'
miRNA:   3'- -GCGcGUCGCGCGCGCaCuaGa---GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 57276 0.68 0.565997
Target:  5'- cCGCGCggggccGGCGCGCGCGgcugcGGcgccgcUCUCGGa- -3'
miRNA:   3'- -GCGCG------UCGCGCGCGCa----CU------AGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 58164 0.68 0.556298
Target:  5'- gCGCGCaAGCGCGUGCGcaUGAUgUaCGuGGa -3'
miRNA:   3'- -GCGCG-UCGCGCGCGC--ACUAgA-GC-CCc -5'
25687 5' -60.9 NC_005337.1 + 59739 0.74 0.284779
Target:  5'- cCGCGCGGCGgaGCGCGUcuccgcGAgCUCGGuGGa -3'
miRNA:   3'- -GCGCGUCGCg-CGCGCA------CUaGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 60200 0.66 0.693696
Target:  5'- gGUGCGGCGCGgGgGggGAcggCUUGGGc -3'
miRNA:   3'- gCGCGUCGCGCgCgCa-CUa--GAGCCCc -5'
25687 5' -60.9 NC_005337.1 + 60274 0.68 0.556298
Target:  5'- gGgGCAgGCGCGgGgGUGGgagugggCUUGGGGu -3'
miRNA:   3'- gCgCGU-CGCGCgCgCACUa------GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 61239 0.67 0.644633
Target:  5'- aGcCGCAGCGUGCccucCGUGAcCUCGacGGGc -3'
miRNA:   3'- gC-GCGUCGCGCGc---GCACUaGAGC--CCC- -5'
25687 5' -60.9 NC_005337.1 + 63417 0.68 0.58552
Target:  5'- gCGCGCucguacAGCGCGCgguucuccGCGU--UCUCGGGc -3'
miRNA:   3'- -GCGCG------UCGCGCG--------CGCAcuAGAGCCCc -5'
25687 5' -60.9 NC_005337.1 + 64026 0.68 0.595332
Target:  5'- gCGCGCAGCGCGUgGCGUaGUCgaugacgagCGGc- -3'
miRNA:   3'- -GCGCGUCGCGCG-CGCAcUAGa--------GCCcc -5'
25687 5' -60.9 NC_005337.1 + 64929 0.69 0.518038
Target:  5'- cCGCGCgggaaAGCGCGCGCcGUGAUCcgCGu-- -3'
miRNA:   3'- -GCGCG-----UCGCGCGCG-CACUAGa-GCccc -5'
25687 5' -60.9 NC_005337.1 + 67325 0.68 0.57574
Target:  5'- gCGCGCucgaucGCGCGCGCGUccgGGUC-CGuGGc -3'
miRNA:   3'- -GCGCGu-----CGCGCGCGCA---CUAGaGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 67744 0.69 0.518038
Target:  5'- gGCGCGGCGCGCaGCuccagcGUCUCGGccGGc -3'
miRNA:   3'- gCGCGUCGCGCG-CGcac---UAGAGCC--CC- -5'
25687 5' -60.9 NC_005337.1 + 67888 0.69 0.518038
Target:  5'- gGCGCAGCGCGUGCucGAag-CGGuGGa -3'
miRNA:   3'- gCGCGUCGCGCGCGcaCUagaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 68358 0.66 0.683948
Target:  5'- gGCGCGGuCGCGauCGCGUGGag-CGaGGGc -3'
miRNA:   3'- gCGCGUC-GCGC--GCGCACUagaGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 68638 0.72 0.362538
Target:  5'- aGCGUGGCGgagGgGCG-GAUCUUGGGGu -3'
miRNA:   3'- gCGCGUCGCg--CgCGCaCUAGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 69295 0.67 0.615023
Target:  5'- aCGgGCAGUuCGCGCGgGAgaaggccuUCUCGGuGGu -3'
miRNA:   3'- -GCgCGUCGcGCGCGCaCU--------AGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 69839 0.66 0.674159
Target:  5'- gGCGCAGaucaGCGCcuugGCGUGGggcgCGGGu -3'
miRNA:   3'- gCGCGUCg---CGCG----CGCACUaga-GCCCc -5'
25687 5' -60.9 NC_005337.1 + 73411 0.71 0.4277
Target:  5'- -cCGCAGCuCGUGgaCGUGGUgCUCGGGGa -3'
miRNA:   3'- gcGCGUCGcGCGC--GCACUA-GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 73457 0.68 0.58552
Target:  5'- uCGCGCGGCgGUGcCGCGUGcccgCGGaGGa -3'
miRNA:   3'- -GCGCGUCG-CGC-GCGCACuagaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 74379 0.71 0.4277
Target:  5'- gGCGCAGCuGCGCGagaCGUacAUCUCcGGGGc -3'
miRNA:   3'- gCGCGUCG-CGCGC---GCAc-UAGAG-CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.