Results 81 - 100 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 74937 | 0.7 | 0.480867 |
Target: 5'- gCGCGCGGC-CGCGCG-GAUgCggugcUGGGGc -3' miRNA: 3'- -GCGCGUCGcGCGCGCaCUA-Ga----GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 76841 | 0.67 | 0.615023 |
Target: 5'- uGCGCAGCGCaCGCGguaGAUggaCGGGc -3' miRNA: 3'- gCGCGUCGCGcGCGCa--CUAga-GCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 77463 | 0.66 | 0.664339 |
Target: 5'- uCGUgGUGGCGUGCGCGgcgacgcGUCcCGGGGc -3' miRNA: 3'- -GCG-CGUCGCGCGCGCac-----UAGaGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 77907 | 0.66 | 0.664339 |
Target: 5'- aCGCGCAGCGCGUGCacuacgUCGGu- -3' miRNA: 3'- -GCGCGUCGCGCGCGcacuagAGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 80204 | 0.67 | 0.605168 |
Target: 5'- uCGCGCgucucguugaugAGCGCGCGCacgcggUCGGGGu -3' miRNA: 3'- -GCGCG------------UCGCGCGCGcacuagAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 80270 | 0.69 | 0.518038 |
Target: 5'- uGCGCGuGCGCGaCGCGgUGAUC-CGGc- -3' miRNA: 3'- gCGCGU-CGCGC-GCGC-ACUAGaGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 81783 | 0.66 | 0.664339 |
Target: 5'- uGCGCAugGCGCGCaUGAgccggcUCUCGcGGGc -3' miRNA: 3'- gCGCGUcgCGCGCGcACU------AGAGC-CCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 83300 | 0.66 | 0.722623 |
Target: 5'- aCGCGCGGCGCccCGCccGGUCgaccggcuaGGGGc -3' miRNA: 3'- -GCGCGUCGCGc-GCGcaCUAGag-------CCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 83975 | 0.67 | 0.605168 |
Target: 5'- aGCgGCGGCGCGgGCGggcacGUCUgggccugcaCGGGGc -3' miRNA: 3'- gCG-CGUCGCGCgCGCac---UAGA---------GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 84044 | 0.66 | 0.713042 |
Target: 5'- gGCGgAG-GCGCGCacGAcgccCUCGGGGa -3' miRNA: 3'- gCGCgUCgCGCGCGcaCUa---GAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 84564 | 0.71 | 0.4277 |
Target: 5'- aCGCGCGGCa-GCGCGUGAcCgCGaGGGu -3' miRNA: 3'- -GCGCGUCGcgCGCGCACUaGaGC-CCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 84654 | 0.66 | 0.703397 |
Target: 5'- aGCGaCAaCGUcCGCGUGAUCUggucgucggaCGGGGc -3' miRNA: 3'- gCGC-GUcGCGcGCGCACUAGA----------GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 85366 | 0.66 | 0.697583 |
Target: 5'- aCGCGguGCccGUguuuaugaacuccagGUGCGUGGUCUggccgccgggCGGGGa -3' miRNA: 3'- -GCGCguCG--CG---------------CGCGCACUAGA----------GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 86184 | 0.76 | 0.2208 |
Target: 5'- aGCGCAuGCGCGCGCGcuUGAaCUCcGGGc -3' miRNA: 3'- gCGCGU-CGCGCGCGC--ACUaGAGcCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 88872 | 0.66 | 0.692724 |
Target: 5'- cCGCGCAGUGgaGCGUcagcaccgggucgGUGGUCUCGcaGGu -3' miRNA: 3'- -GCGCGUCGCg-CGCG-------------CACUAGAGCc-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 89959 | 0.7 | 0.445043 |
Target: 5'- gGCGCGGC-CGCaGCacGcgCUCGGGGg -3' miRNA: 3'- gCGCGUCGcGCG-CGcaCuaGAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 90648 | 0.78 | 0.161389 |
Target: 5'- uCGCGCGGCG-GCGC-UGAUCUCGGa- -3' miRNA: 3'- -GCGCGUCGCgCGCGcACUAGAGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 93358 | 0.66 | 0.722623 |
Target: 5'- aCGCGCAGCGCcacCGgGUGAUgaugCUCGa-- -3' miRNA: 3'- -GCGCGUCGCGc--GCgCACUA----GAGCccc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 94789 | 0.67 | 0.605168 |
Target: 5'- aGCaGCAGCGCGCGCGc-GUCgccggcaCGGaGGc -3' miRNA: 3'- gCG-CGUCGCGCGCGCacUAGa------GCC-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 95307 | 0.66 | 0.664339 |
Target: 5'- gCGCGCGGCGCGCuguuGCGcucGUCgUCGGu- -3' miRNA: 3'- -GCGCGUCGCGCG----CGCac-UAG-AGCCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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