miRNA display CGI


Results 101 - 120 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 95604 0.66 0.721668
Target:  5'- gGUGCAGCaGCGCGCcauggcggcguccGUGggCgCGGGc -3'
miRNA:   3'- gCGCGUCG-CGCGCG-------------CACuaGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 96876 0.67 0.634763
Target:  5'- cCGCGCGGaUGCGCgGCGUGGaCgUCGGcGa -3'
miRNA:   3'- -GCGCGUC-GCGCG-CGCACUaG-AGCC-Cc -5'
25687 5' -60.9 NC_005337.1 + 97068 0.75 0.231446
Target:  5'- aCGCGCGGCGCGCG-GUGGUCUgCGu-- -3'
miRNA:   3'- -GCGCGUCGCGCGCgCACUAGA-GCccc -5'
25687 5' -60.9 NC_005337.1 + 97776 0.68 0.559203
Target:  5'- gCGCGCuGCGCGagaaggaccgcuuCGUGUGGuguccacgguguucuUCUCGGGc -3'
miRNA:   3'- -GCGCGuCGCGC-------------GCGCACU---------------AGAGCCCc -5'
25687 5' -60.9 NC_005337.1 + 98723 0.68 0.595332
Target:  5'- uCGCGCGGCGCccuGCGCGUGcugaccGUCaUGGa- -3'
miRNA:   3'- -GCGCGUCGCG---CGCGCAC------UAGaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 98879 0.74 0.265993
Target:  5'- cCGCGCcGCGCGCGCG-GAcugcgcgcUCgagccCGGGGa -3'
miRNA:   3'- -GCGCGuCGCGCGCGCaCU--------AGa----GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 100225 0.78 0.142648
Target:  5'- gGCGCcGCGUGCGCGUGAUCgCGGu- -3'
miRNA:   3'- gCGCGuCGCGCGCGCACUAGaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 102017 0.74 0.291269
Target:  5'- uCGUGCAGCGCGCggGCGUGAUCgCGu-- -3'
miRNA:   3'- -GCGCGUCGCGCG--CGCACUAGaGCccc -5'
25687 5' -60.9 NC_005337.1 + 102947 0.71 0.419179
Target:  5'- gGUGCAGUGCGagaacacCGUGGUCgUGGGGa -3'
miRNA:   3'- gCGCGUCGCGCgc-----GCACUAGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 104198 0.72 0.362538
Target:  5'- uGCGCgAGCGC-CGCGccAUcCUCGGGGa -3'
miRNA:   3'- gCGCG-UCGCGcGCGCacUA-GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 104564 0.67 0.644633
Target:  5'- gCGCGCGuGCGCgccucGCGCGUccguccGGUCgUCGGcGGc -3'
miRNA:   3'- -GCGCGU-CGCG-----CGCGCA------CUAG-AGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 105166 0.66 0.670234
Target:  5'- gGCGCuGCaCG-GCGUGGUCgaccccugcuucgCGGGGu -3'
miRNA:   3'- gCGCGuCGcGCgCGCACUAGa------------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 108548 0.66 0.713042
Target:  5'- uGCGgGGCGCGCGCcUGAcgCU-GGcGGc -3'
miRNA:   3'- gCGCgUCGCGCGCGcACUa-GAgCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 108897 0.68 0.595332
Target:  5'- gGCgGCAGCGaGCGCGUGAgcaaGGGc -3'
miRNA:   3'- gCG-CGUCGCgCGCGCACUagagCCCc -5'
25687 5' -60.9 NC_005337.1 + 109179 0.69 0.490043
Target:  5'- cCGCGCcGCGCGgGCG-GAgCUCGGc- -3'
miRNA:   3'- -GCGCGuCGCGCgCGCaCUaGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 109474 0.71 0.402451
Target:  5'- gCGCGCGuGgGCGCGCuuccgGAUCUCGGcGa -3'
miRNA:   3'- -GCGCGU-CgCGCGCGca---CUAGAGCC-Cc -5'
25687 5' -60.9 NC_005337.1 + 109532 0.7 0.468164
Target:  5'- cCGCGCGGCGCgauggcgguguaggGCGCGUacccgcgGAacUCcgCGGGGu -3'
miRNA:   3'- -GCGCGUCGCG--------------CGCGCA-------CU--AGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 110368 0.66 0.722623
Target:  5'- gCGCGCGG-GCGCGCGgcagCgacaggCGGaGGa -3'
miRNA:   3'- -GCGCGUCgCGCGCGCacuaGa-----GCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 111532 0.67 0.62489
Target:  5'- cCGCGCucCGC-CGCGUGcAggUCGGGGu -3'
miRNA:   3'- -GCGCGucGCGcGCGCAC-UagAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 118943 0.66 0.674159
Target:  5'- gGCGCAGCGUGCgucGCGcGAUauuccaCGGGu -3'
miRNA:   3'- gCGCGUCGCGCG---CGCaCUAga----GCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.