miRNA display CGI


Results 121 - 136 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 119777 0.7 0.462773
Target:  5'- aCGCauGUGGC-CGCGCGUGGUCggugCGGuGGu -3'
miRNA:   3'- -GCG--CGUCGcGCGCGCACUAGa---GCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 120463 0.69 0.499299
Target:  5'- gCGCGCucgAGCGCGCGCuG-GAUCgcgCGGa- -3'
miRNA:   3'- -GCGCG---UCGCGCGCG-CaCUAGa--GCCcc -5'
25687 5' -60.9 NC_005337.1 + 121569 0.76 0.2208
Target:  5'- aGCGCGGCGCGCGCGcgGAcgCcacCGGGa -3'
miRNA:   3'- gCGCGUCGCGCGCGCa-CUa-Ga--GCCCc -5'
25687 5' -60.9 NC_005337.1 + 121687 0.69 0.518038
Target:  5'- cCGCGCGG-GCGCcaaCGUGAacgCgcgCGGGGa -3'
miRNA:   3'- -GCGCGUCgCGCGc--GCACUa--Ga--GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 122377 0.71 0.419179
Target:  5'- aCGCGCAuguGCGUGCGCGaGGUCgugcugcgCGGcGGc -3'
miRNA:   3'- -GCGCGU---CGCGCGCGCaCUAGa-------GCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 122818 0.67 0.62489
Target:  5'- -cCGCAGCGUGCGCGUccgcguGAUCgugaCGGa- -3'
miRNA:   3'- gcGCGUCGCGCGCGCA------CUAGa---GCCcc -5'
25687 5' -60.9 NC_005337.1 + 126435 0.7 0.469066
Target:  5'- gGCGC-GCGUGCGCGUGuaccaccgcgcgcuGUCgCGGaGGa -3'
miRNA:   3'- gCGCGuCGCGCGCGCAC--------------UAGaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 126943 0.66 0.713042
Target:  5'- gGCGCGgacgugaacGCGCGCGaCGUGug--CGGGu -3'
miRNA:   3'- gCGCGU---------CGCGCGC-GCACuagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 127887 0.69 0.53705
Target:  5'- gCGCGCGGCGCcggcgaGCGCGUG----CGGGc -3'
miRNA:   3'- -GCGCGUCGCG------CGCGCACuagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 128024 0.66 0.693696
Target:  5'- gGCGcCAGCGUcaGCGaCGcUGAcUCgcgCGGGGa -3'
miRNA:   3'- gCGC-GUCGCG--CGC-GC-ACU-AGa--GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 128124 0.66 0.716883
Target:  5'- uGCGCGGCuGC-CGCGUGAacgcgcgaaacgcgCUCGGa- -3'
miRNA:   3'- gCGCGUCG-CGcGCGCACUa-------------GAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 128321 0.71 0.410762
Target:  5'- gCGCGCGGCGCGaGCGcGAcugCUCGGu- -3'
miRNA:   3'- -GCGCGUCGCGCgCGCaCUa--GAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 129533 0.75 0.254035
Target:  5'- gCGCGCGGCGCgaGCGUccGUGAUCUCGa-- -3'
miRNA:   3'- -GCGCGUCGCG--CGCG--CACUAGAGCccc -5'
25687 5' -60.9 NC_005337.1 + 130149 0.66 0.722623
Target:  5'- gCGCGCuGGCGCuCGCGcGcUUUCGGaGGc -3'
miRNA:   3'- -GCGCG-UCGCGcGCGCaCuAGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 130648 0.67 0.618969
Target:  5'- gGCGCGGaCGUGCGCGcGAgggacgUCUacggcgcuacgccgcUGGGGg -3'
miRNA:   3'- gCGCGUC-GCGCGCGCaCU------AGA---------------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 131332 0.66 0.693696
Target:  5'- cCGCGCucauGCGCGC-CGUGcgCgUCGGc- -3'
miRNA:   3'- -GCGCGu---CGCGCGcGCACuaG-AGCCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.