miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 89959 0.7 0.445043
Target:  5'- gGCGCGGC-CGCaGCacGcgCUCGGGGg -3'
miRNA:   3'- gCGCGUCGcGCG-CGcaCuaGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 88872 0.66 0.692724
Target:  5'- cCGCGCAGUGgaGCGUcagcaccgggucgGUGGUCUCGcaGGu -3'
miRNA:   3'- -GCGCGUCGCg-CGCG-------------CACUAGAGCc-CC- -5'
25687 5' -60.9 NC_005337.1 + 86184 0.76 0.2208
Target:  5'- aGCGCAuGCGCGCGCGcuUGAaCUCcGGGc -3'
miRNA:   3'- gCGCGU-CGCGCGCGC--ACUaGAGcCCC- -5'
25687 5' -60.9 NC_005337.1 + 85366 0.66 0.697583
Target:  5'- aCGCGguGCccGUguuuaugaacuccagGUGCGUGGUCUggccgccgggCGGGGa -3'
miRNA:   3'- -GCGCguCG--CG---------------CGCGCACUAGA----------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 84654 0.66 0.703397
Target:  5'- aGCGaCAaCGUcCGCGUGAUCUggucgucggaCGGGGc -3'
miRNA:   3'- gCGC-GUcGCGcGCGCACUAGA----------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 84564 0.71 0.4277
Target:  5'- aCGCGCGGCa-GCGCGUGAcCgCGaGGGu -3'
miRNA:   3'- -GCGCGUCGcgCGCGCACUaGaGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 84044 0.66 0.713042
Target:  5'- gGCGgAG-GCGCGCacGAcgccCUCGGGGa -3'
miRNA:   3'- gCGCgUCgCGCGCGcaCUa---GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 83975 0.67 0.605168
Target:  5'- aGCgGCGGCGCGgGCGggcacGUCUgggccugcaCGGGGc -3'
miRNA:   3'- gCG-CGUCGCGCgCGCac---UAGA---------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 83300 0.66 0.722623
Target:  5'- aCGCGCGGCGCccCGCccGGUCgaccggcuaGGGGc -3'
miRNA:   3'- -GCGCGUCGCGc-GCGcaCUAGag-------CCCC- -5'
25687 5' -60.9 NC_005337.1 + 81783 0.66 0.664339
Target:  5'- uGCGCAugGCGCGCaUGAgccggcUCUCGcGGGc -3'
miRNA:   3'- gCGCGUcgCGCGCGcACU------AGAGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 80270 0.69 0.518038
Target:  5'- uGCGCGuGCGCGaCGCGgUGAUC-CGGc- -3'
miRNA:   3'- gCGCGU-CGCGC-GCGC-ACUAGaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 80204 0.67 0.605168
Target:  5'- uCGCGCgucucguugaugAGCGCGCGCacgcggUCGGGGu -3'
miRNA:   3'- -GCGCG------------UCGCGCGCGcacuagAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 77907 0.66 0.664339
Target:  5'- aCGCGCAGCGCGUGCacuacgUCGGu- -3'
miRNA:   3'- -GCGCGUCGCGCGCGcacuagAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 77463 0.66 0.664339
Target:  5'- uCGUgGUGGCGUGCGCGgcgacgcGUCcCGGGGc -3'
miRNA:   3'- -GCG-CGUCGCGCGCGCac-----UAGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 76841 0.67 0.615023
Target:  5'- uGCGCAGCGCaCGCGguaGAUggaCGGGc -3'
miRNA:   3'- gCGCGUCGCGcGCGCa--CUAga-GCCCc -5'
25687 5' -60.9 NC_005337.1 + 74937 0.7 0.480867
Target:  5'- gCGCGCGGC-CGCGCG-GAUgCggugcUGGGGc -3'
miRNA:   3'- -GCGCGUCGcGCGCGCaCUA-Ga----GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 74379 0.71 0.4277
Target:  5'- gGCGCAGCuGCGCGagaCGUacAUCUCcGGGGc -3'
miRNA:   3'- gCGCGUCG-CGCGC---GCAc-UAGAG-CCCC- -5'
25687 5' -60.9 NC_005337.1 + 73457 0.68 0.58552
Target:  5'- uCGCGCGGCgGUGcCGCGUGcccgCGGaGGa -3'
miRNA:   3'- -GCGCGUCG-CGC-GCGCACuagaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 73411 0.71 0.4277
Target:  5'- -cCGCAGCuCGUGgaCGUGGUgCUCGGGGa -3'
miRNA:   3'- gcGCGUCGcGCGC--GCACUA-GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 69839 0.66 0.674159
Target:  5'- gGCGCAGaucaGCGCcuugGCGUGGggcgCGGGu -3'
miRNA:   3'- gCGCGUCg---CGCG----CGCACUaga-GCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.