miRNA display CGI


Results 81 - 100 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 50196 0.69 0.53705
Target:  5'- cCGCGCucuGCgGCGCGCGUcugCacaCGGGGa -3'
miRNA:   3'- -GCGCGu--CG-CGCGCGCAcuaGa--GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 49720 0.66 0.690777
Target:  5'- aCGCGCuGC-CGCGCGUucguuuccacagccGccgcGUcCUCGGGGa -3'
miRNA:   3'- -GCGCGuCGcGCGCGCA--------------C----UA-GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 49098 0.69 0.518038
Target:  5'- uCGCGCAGCucGUGCGCGaGGUCaUCGacucgcuccgcGGGa -3'
miRNA:   3'- -GCGCGUCG--CGCGCGCaCUAG-AGC-----------CCC- -5'
25687 5' -60.9 NC_005337.1 + 47314 0.69 0.518038
Target:  5'- gCGCGUGGUcauguucgagGCGCGCGUGGUCaUGGa- -3'
miRNA:   3'- -GCGCGUCG----------CGCGCGCACUAGaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 46460 0.7 0.445043
Target:  5'- gCGCGCGGCGCGCcgGCGaGcUCcCGGGc -3'
miRNA:   3'- -GCGCGUCGCGCG--CGCaCuAGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 45433 0.68 0.546647
Target:  5'- aGCGCAGCuGCaucacguacagGCGguaCGUGAUCUCGGuGa -3'
miRNA:   3'- gCGCGUCG-CG-----------CGC---GCACUAGAGCC-Cc -5'
25687 5' -60.9 NC_005337.1 + 42752 0.67 0.653509
Target:  5'- gCGUGCGGUGCgggucccGCGCGUucgugugCUCGGGcGg -3'
miRNA:   3'- -GCGCGUCGCG-------CGCGCAcua----GAGCCC-C- -5'
25687 5' -60.9 NC_005337.1 + 42531 0.8 0.119748
Target:  5'- gGCGCA-CGCGCGCGUGG-C-CGGGGg -3'
miRNA:   3'- gCGCGUcGCGCGCGCACUaGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 42405 0.66 0.721668
Target:  5'- gCGCGCGGCcucgcuguGCGCcggcuucgGCGUGAgCUuccgggccgaguaCGGGGa -3'
miRNA:   3'- -GCGCGUCG--------CGCG--------CGCACUaGA-------------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 41285 0.66 0.674159
Target:  5'- uCGCGCAGCGCcaucacggccaGCGCGUuGUCcagCGuGGc -3'
miRNA:   3'- -GCGCGUCGCG-----------CGCGCAcUAGa--GC-CCc -5'
25687 5' -60.9 NC_005337.1 + 40539 0.71 0.419179
Target:  5'- cCGcCGCGGCGCGCG-GUGGugcgguUCUCGaGGa -3'
miRNA:   3'- -GC-GCGUCGCGCGCgCACU------AGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 39925 0.68 0.58552
Target:  5'- aCGUGUGGCGCGCGC-UGAgcgucacgugcuUCaUCGuGGGc -3'
miRNA:   3'- -GCGCGUCGCGCGCGcACU------------AG-AGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 39647 0.68 0.58552
Target:  5'- aCGCaGCGGCGCggccgcgugggGCGCGUGGcCcCGGGc -3'
miRNA:   3'- -GCG-CGUCGCG-----------CGCGCACUaGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 38605 0.75 0.22607
Target:  5'- aGCGCAGCGUGgGCGUGc---UGGGGa -3'
miRNA:   3'- gCGCGUCGCGCgCGCACuagaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 38479 0.71 0.382946
Target:  5'- gCGCGCcgGGCGCGCGCGUcgccgagcuggccGAcgacgucgccgcgaUCgCGGGGa -3'
miRNA:   3'- -GCGCG--UCGCGCGCGCA-------------CU--------------AGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 38254 0.66 0.674159
Target:  5'- aGaCGCGGCGCGCGUucGcgCUCGcGGc -3'
miRNA:   3'- gC-GCGUCGCGCGCGcaCuaGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 37407 0.67 0.654494
Target:  5'- cCGCGCAuccGCGCGgaguCGCG-GAgC-CGGGGg -3'
miRNA:   3'- -GCGCGU---CGCGC----GCGCaCUaGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 37218 0.7 0.480867
Target:  5'- gCGCGCcGCGCGUGCGUGG-CgaugaGGuGGc -3'
miRNA:   3'- -GCGCGuCGCGCGCGCACUaGag---CC-CC- -5'
25687 5' -60.9 NC_005337.1 + 37094 0.66 0.664339
Target:  5'- -cCGCAGCGUGCGgaaGU--UgUCGGGGg -3'
miRNA:   3'- gcGCGUCGCGCGCg--CAcuAgAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 36896 0.69 0.490043
Target:  5'- uCGCGCGGCGCG-GCGUGGcCgUCaGGa -3'
miRNA:   3'- -GCGCGUCGCGCgCGCACUaG-AGcCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.