Results 61 - 80 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 67744 | 0.69 | 0.518038 |
Target: 5'- gGCGCGGCGCGCaGCuccagcGUCUCGGccGGc -3' miRNA: 3'- gCGCGUCGCGCG-CGcac---UAGAGCC--CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 64929 | 0.69 | 0.518038 |
Target: 5'- cCGCGCgggaaAGCGCGCGCcGUGAUCcgCGu-- -3' miRNA: 3'- -GCGCG-----UCGCGCGCG-CACUAGa-GCccc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 109532 | 0.7 | 0.468164 |
Target: 5'- cCGCGCGGCGCgauggcgguguaggGCGCGUacccgcgGAacUCcgCGGGGu -3' miRNA: 3'- -GCGCGUCGCG--------------CGCGCA-------CU--AGa-GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 126435 | 0.7 | 0.469066 |
Target: 5'- gGCGC-GCGUGCGCGUGuaccaccgcgcgcuGUCgCGGaGGa -3' miRNA: 3'- gCGCGuCGCGCGCGCAC--------------UAGaGCC-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 74937 | 0.7 | 0.480867 |
Target: 5'- gCGCGCGGC-CGCGCG-GAUgCggugcUGGGGc -3' miRNA: 3'- -GCGCGUCGcGCGCGCaCUA-Ga----GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 28495 | 0.7 | 0.480867 |
Target: 5'- cCGCGCGGCGCGCG-GUcGcgCggcacugcgUGGGGc -3' miRNA: 3'- -GCGCGUCGCGCGCgCA-CuaGa--------GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 109179 | 0.69 | 0.490043 |
Target: 5'- cCGCGCcGCGCGgGCG-GAgCUCGGc- -3' miRNA: 3'- -GCGCGuCGCGCgCGCaCUaGAGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 67888 | 0.69 | 0.518038 |
Target: 5'- gGCGCAGCGCGUGCucGAag-CGGuGGa -3' miRNA: 3'- gCGCGUCGCGCGCGcaCUagaGCC-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 47314 | 0.69 | 0.518038 |
Target: 5'- gCGCGUGGUcauguucgagGCGCGCGUGGUCaUGGa- -3' miRNA: 3'- -GCGCGUCG----------CGCGCGCACUAGaGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 4501 | 0.71 | 0.391808 |
Target: 5'- aCGUGCAGCgGCGUGUucccgaacacguugGUGGUCaUGGGGu -3' miRNA: 3'- -GCGCGUCG-CGCGCG--------------CACUAGaGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 68638 | 0.72 | 0.362538 |
Target: 5'- aGCGUGGCGgagGgGCG-GAUCUUGGGGu -3' miRNA: 3'- gCGCGUCGCg--CgCGCaCUAGAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 5574 | 0.72 | 0.339944 |
Target: 5'- gCGCGcCAGCcgcgucgccaGCGCGCGUGccCggCGGGGg -3' miRNA: 3'- -GCGC-GUCG----------CGCGCGCACuaGa-GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 10982 | 0.72 | 0.339208 |
Target: 5'- cCGCGCAGCGCGUGCGgcacgGAcacggucaccaugUC-CGaGGGc -3' miRNA: 3'- -GCGCGUCGCGCGCGCa----CU-------------AGaGC-CCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 31908 | 0.73 | 0.311434 |
Target: 5'- aGCGCGGUggccagGUGCGCGgc--CUCGGGGg -3' miRNA: 3'- gCGCGUCG------CGCGCGCacuaGAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 102017 | 0.74 | 0.291269 |
Target: 5'- uCGUGCAGCGCGCggGCGUGAUCgCGu-- -3' miRNA: 3'- -GCGCGUCGCGCG--CGCACUAGaGCccc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 59739 | 0.74 | 0.284779 |
Target: 5'- cCGCGCGGCGgaGCGCGUcuccgcGAgCUCGGuGGa -3' miRNA: 3'- -GCGCGUCGCg-CGCGCA------CUaGAGCC-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 86184 | 0.76 | 0.2208 |
Target: 5'- aGCGCAuGCGCGCGCGcuUGAaCUCcGGGc -3' miRNA: 3'- gCGCGU-CGCGCGCGC--ACUaGAGcCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 90648 | 0.78 | 0.161389 |
Target: 5'- uCGCGCGGCG-GCGC-UGAUCUCGGa- -3' miRNA: 3'- -GCGCGUCGCgCGCGcACUAGAGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 42531 | 0.8 | 0.119748 |
Target: 5'- gGCGCA-CGCGCGCGUGG-C-CGGGGg -3' miRNA: 3'- gCGCGUcGCGCGCGCACUaGaGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 93358 | 0.66 | 0.722623 |
Target: 5'- aCGCGCAGCGCcacCGgGUGAUgaugCUCGa-- -3' miRNA: 3'- -GCGCGUCGCGc--GCgCACUA----GAGCccc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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