miRNA display CGI


Results 121 - 136 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 12585 0.7 0.466364
Target:  5'- gCGCGCguucacguuGGCGCccGCGCG-GAUgagcagguccacgacCUCGGGGg -3'
miRNA:   3'- -GCGCG---------UCGCG--CGCGCaCUA---------------GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 1127 0.68 0.57574
Target:  5'- aGcCGCAGCaCGCGCGcGAccagcUCcgCGGGGa -3'
miRNA:   3'- gC-GCGUCGcGCGCGCaCU-----AGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 53850 0.68 0.574764
Target:  5'- gGCGCuGCGCGcCGCGgacggcuccugcUGGUUcugcaagcaggcgUCGGGGc -3'
miRNA:   3'- gCGCGuCGCGC-GCGC------------ACUAG-------------AGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 57276 0.68 0.565997
Target:  5'- cCGCGCggggccGGCGCGCGCGgcugcGGcgccgcUCUCGGa- -3'
miRNA:   3'- -GCGCG------UCGCGCGCGCa----CU------AGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 58164 0.68 0.556298
Target:  5'- gCGCGCaAGCGCGUGCGcaUGAUgUaCGuGGa -3'
miRNA:   3'- -GCGCG-UCGCGCGCGC--ACUAgA-GC-CCc -5'
25687 5' -60.9 NC_005337.1 + 45433 0.68 0.546647
Target:  5'- aGCGCAGCuGCaucacguacagGCGguaCGUGAUCUCGGuGa -3'
miRNA:   3'- gCGCGUCG-CG-----------CGC---GCACUAGAGCC-Cc -5'
25687 5' -60.9 NC_005337.1 + 127887 0.69 0.53705
Target:  5'- gCGCGCGGCGCcggcgaGCGCGUG----CGGGc -3'
miRNA:   3'- -GCGCGUCGCG------CGCGCACuagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 80270 0.69 0.518038
Target:  5'- uGCGCGuGCGCGaCGCGgUGAUC-CGGc- -3'
miRNA:   3'- gCGCGU-CGCGC-GCGC-ACUAGaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 53592 0.69 0.518038
Target:  5'- uCGCGCAcauGCGCGCGCGgaagcgcgccgcgcaGAUCcaggaguUCGGGc -3'
miRNA:   3'- -GCGCGU---CGCGCGCGCa--------------CUAG-------AGCCCc -5'
25687 5' -60.9 NC_005337.1 + 49098 0.69 0.518038
Target:  5'- uCGCGCAGCucGUGCGCGaGGUCaUCGacucgcuccgcGGGa -3'
miRNA:   3'- -GCGCGUCG--CGCGCGCaCUAG-AGC-----------CCC- -5'
25687 5' -60.9 NC_005337.1 + 10237 0.69 0.499299
Target:  5'- cCGCgGCAG-GCGCGCGgccuUCgCGGGGc -3'
miRNA:   3'- -GCG-CGUCgCGCGCGCacu-AGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 120463 0.69 0.499299
Target:  5'- gCGCGCucgAGCGCGCGCuG-GAUCgcgCGGa- -3'
miRNA:   3'- -GCGCG---UCGCGCGCG-CaCUAGa--GCCcc -5'
25687 5' -60.9 NC_005337.1 + 36896 0.69 0.490043
Target:  5'- uCGCGCGGCGCG-GCGUGGcCgUCaGGa -3'
miRNA:   3'- -GCGCGUCGCGCgCGCACUaG-AGcCCc -5'
25687 5' -60.9 NC_005337.1 + 37218 0.7 0.480867
Target:  5'- gCGCGCcGCGCGUGCGUGG-CgaugaGGuGGc -3'
miRNA:   3'- -GCGCGuCGCGCGCGCACUaGag---CC-CC- -5'
25687 5' -60.9 NC_005337.1 + 56130 0.7 0.471776
Target:  5'- uCGC-CAGCGUGCGCG-GcgUgcagCGGGGc -3'
miRNA:   3'- -GCGcGUCGCGCGCGCaCuaGa---GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 36511 1.1 0.000866
Target:  5'- uCGCGCAGCGCGCGCGUGAUCUCGGGGg -3'
miRNA:   3'- -GCGCGUCGCGCGCGCACUAGAGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.