miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 39925 0.68 0.58552
Target:  5'- aCGUGUGGCGCGCGC-UGAgcgucacgugcuUCaUCGuGGGc -3'
miRNA:   3'- -GCGCGUCGCGCGCGcACU------------AG-AGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 12585 0.7 0.466364
Target:  5'- gCGCGCguucacguuGGCGCccGCGCG-GAUgagcagguccacgacCUCGGGGg -3'
miRNA:   3'- -GCGCG---------UCGCG--CGCGCaCUA---------------GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 90648 0.78 0.161389
Target:  5'- uCGCGCGGCG-GCGC-UGAUCUCGGa- -3'
miRNA:   3'- -GCGCGUCGCgCGCGcACUAGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 67325 0.68 0.57574
Target:  5'- gCGCGCucgaucGCGCGCGCGUccgGGUC-CGuGGc -3'
miRNA:   3'- -GCGCGu-----CGCGCGCGCA---CUAGaGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 42531 0.8 0.119748
Target:  5'- gGCGCA-CGCGCGCGUGG-C-CGGGGg -3'
miRNA:   3'- gCGCGUcGCGCGCGCACUaGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 18850 0.66 0.674159
Target:  5'- uCGC-CAGCaCGCGCcgcaUGAUaUCGGGGg -3'
miRNA:   3'- -GCGcGUCGcGCGCGc---ACUAgAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 59739 0.74 0.284779
Target:  5'- cCGCGCGGCGgaGCGCGUcuccgcGAgCUCGGuGGa -3'
miRNA:   3'- -GCGCGUCGCg-CGCGCA------CUaGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 95307 0.66 0.664339
Target:  5'- gCGCGCGGCGCGCuguuGCGcucGUCgUCGGu- -3'
miRNA:   3'- -GCGCGUCGCGCG----CGCac-UAG-AGCCcc -5'
25687 5' -60.9 NC_005337.1 + 989 0.67 0.654494
Target:  5'- gGCGCGGCGCGCG-GaGGg--CGGGc -3'
miRNA:   3'- gCGCGUCGCGCGCgCaCUagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 111532 0.67 0.62489
Target:  5'- cCGCGCucCGC-CGCGUGcAggUCGGGGu -3'
miRNA:   3'- -GCGCGucGCGcGCGCAC-UagAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 30145 0.67 0.615023
Target:  5'- aCGCGCuccaCGCGCGCGggguaGAUgUCGGa- -3'
miRNA:   3'- -GCGCGuc--GCGCGCGCa----CUAgAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 98723 0.68 0.595332
Target:  5'- uCGCGCGGCGCccuGCGCGUGcugaccGUCaUGGa- -3'
miRNA:   3'- -GCGCGUCGCG---CGCGCAC------UAGaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 63417 0.68 0.58552
Target:  5'- gCGCGCucguacAGCGCGCgguucuccGCGU--UCUCGGGc -3'
miRNA:   3'- -GCGCG------UCGCGCG--------CGCAcuAGAGCCCc -5'
25687 5' -60.9 NC_005337.1 + 57276 0.68 0.565997
Target:  5'- cCGCGCggggccGGCGCGCGCGgcugcGGcgccgcUCUCGGa- -3'
miRNA:   3'- -GCGCG------UCGCGCGCGCa----CU------AGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 127887 0.69 0.53705
Target:  5'- gCGCGCGGCGCcggcgaGCGCGUG----CGGGc -3'
miRNA:   3'- -GCGCGUCGCG------CGCGCACuagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 10237 0.69 0.499299
Target:  5'- cCGCgGCAG-GCGCGCGgccuUCgCGGGGc -3'
miRNA:   3'- -GCG-CGUCgCGCGCGCacu-AGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 37218 0.7 0.480867
Target:  5'- gCGCGCcGCGCGUGCGUGG-CgaugaGGuGGc -3'
miRNA:   3'- -GCGCGuCGCGCGCGCACUaGag---CC-CC- -5'
25687 5' -60.9 NC_005337.1 + 74379 0.71 0.4277
Target:  5'- gGCGCAGCuGCGCGagaCGUacAUCUCcGGGGc -3'
miRNA:   3'- gCGCGUCG-CGCGC---GCAc-UAGAG-CCCC- -5'
25687 5' -60.9 NC_005337.1 + 109474 0.71 0.402451
Target:  5'- gCGCGCGuGgGCGCGCuuccgGAUCUCGGcGa -3'
miRNA:   3'- -GCGCGU-CgCGCGCGca---CUAGAGCC-Cc -5'
25687 5' -60.9 NC_005337.1 + 10982 0.72 0.339208
Target:  5'- cCGCGCAGCGCGUGCGgcacgGAcacggucaccaugUC-CGaGGGc -3'
miRNA:   3'- -GCGCGUCGCGCGCGCa----CU-------------AGaGC-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.