miRNA display CGI


Results 61 - 80 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 36896 0.69 0.490043
Target:  5'- uCGCGCGGCGCG-GCGUGGcCgUCaGGa -3'
miRNA:   3'- -GCGCGUCGCGCgCGCACUaG-AGcCCc -5'
25687 5' -60.9 NC_005337.1 + 53592 0.69 0.518038
Target:  5'- uCGCGCAcauGCGCGCGCGgaagcgcgccgcgcaGAUCcaggaguUCGGGc -3'
miRNA:   3'- -GCGCGU---CGCGCGCGCa--------------CUAG-------AGCCCc -5'
25687 5' -60.9 NC_005337.1 + 45433 0.68 0.546647
Target:  5'- aGCGCAGCuGCaucacguacagGCGguaCGUGAUCUCGGuGa -3'
miRNA:   3'- gCGCGUCG-CG-----------CGC---GCACUAGAGCC-Cc -5'
25687 5' -60.9 NC_005337.1 + 53850 0.68 0.574764
Target:  5'- gGCGCuGCGCGcCGCGgacggcuccugcUGGUUcugcaagcaggcgUCGGGGc -3'
miRNA:   3'- gCGCGuCGCGC-GCGC------------ACUAG-------------AGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 95307 0.66 0.664339
Target:  5'- gCGCGCGGCGCGCuguuGCGcucGUCgUCGGu- -3'
miRNA:   3'- -GCGCGUCGCGCG----CGCac-UAG-AGCCcc -5'
25687 5' -60.9 NC_005337.1 + 9369 0.67 0.644633
Target:  5'- gCGCGCuGCGCGUucgagccagacgGCGaGGUCcUCGGaGGc -3'
miRNA:   3'- -GCGCGuCGCGCG------------CGCaCUAG-AGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 12708 0.67 0.62489
Target:  5'- gGCGUccGCGCGCGCGccGcgCUCGaGGa -3'
miRNA:   3'- gCGCGu-CGCGCGCGCa-CuaGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 84564 0.71 0.4277
Target:  5'- aCGCGCGGCa-GCGCGUGAcCgCGaGGGu -3'
miRNA:   3'- -GCGCGUCGcgCGCGCACUaGaGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 88872 0.66 0.692724
Target:  5'- cCGCGCAGUGgaGCGUcagcaccgggucgGUGGUCUCGcaGGu -3'
miRNA:   3'- -GCGCGUCGCg-CGCG-------------CACUAGAGCc-CC- -5'
25687 5' -60.9 NC_005337.1 + 60200 0.66 0.693696
Target:  5'- gGUGCGGCGCGgGgGggGAcggCUUGGGc -3'
miRNA:   3'- gCGCGUCGCGCgCgCa-CUa--GAGCCCc -5'
25687 5' -60.9 NC_005337.1 + 7081 0.66 0.693696
Target:  5'- aCGUGCAGCGCGgucaugucguaCGCGUcaGA-CUCGcGGa -3'
miRNA:   3'- -GCGCGUCGCGC-----------GCGCA--CUaGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 56038 0.66 0.703397
Target:  5'- aCGUGCAGgGCGUGCGg---UUCGuGGa -3'
miRNA:   3'- -GCGCGUCgCGCGCGCacuaGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 97776 0.68 0.559203
Target:  5'- gCGCGCuGCGCGagaaggaccgcuuCGUGUGGuguccacgguguucuUCUCGGGc -3'
miRNA:   3'- -GCGCGuCGCGC-------------GCGCACU---------------AGAGCCCc -5'
25687 5' -60.9 NC_005337.1 + 60274 0.68 0.556298
Target:  5'- gGgGCAgGCGCGgGgGUGGgagugggCUUGGGGu -3'
miRNA:   3'- gCgCGU-CGCGCgCgCACUa------GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 50196 0.69 0.53705
Target:  5'- cCGCGCucuGCgGCGCGCGUcugCacaCGGGGa -3'
miRNA:   3'- -GCGCGu--CG-CGCGCGCAcuaGa--GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 121687 0.69 0.518038
Target:  5'- cCGCGCGG-GCGCcaaCGUGAacgCgcgCGGGGa -3'
miRNA:   3'- -GCGCGUCgCGCGc--GCACUa--Ga--GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 84044 0.66 0.713042
Target:  5'- gGCGgAG-GCGCGCacGAcgccCUCGGGGa -3'
miRNA:   3'- gCGCgUCgCGCGCGcaCUa---GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 31035 0.66 0.713042
Target:  5'- cCGCGCgGGCGCGCaccaGCGgcaGGUUgcagCGGGc -3'
miRNA:   3'- -GCGCG-UCGCGCG----CGCa--CUAGa---GCCCc -5'
25687 5' -60.9 NC_005337.1 + 128024 0.66 0.693696
Target:  5'- gGCGcCAGCGUcaGCGaCGcUGAcUCgcgCGGGGa -3'
miRNA:   3'- gCGC-GUCGCG--CGC-GC-ACU-AGa--GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 73411 0.71 0.4277
Target:  5'- -cCGCAGCuCGUGgaCGUGGUgCUCGGGGa -3'
miRNA:   3'- gcGCGUCGcGCGC--GCACUA-GAGCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.