Results 101 - 120 of 136 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 88872 | 0.66 | 0.692724 |
Target: 5'- cCGCGCAGUGgaGCGUcagcaccgggucgGUGGUCUCGcaGGu -3' miRNA: 3'- -GCGCGUCGCg-CGCG-------------CACUAGAGCc-CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 31035 | 0.66 | 0.713042 |
Target: 5'- cCGCGCgGGCGCGCaccaGCGgcaGGUUgcagCGGGc -3' miRNA: 3'- -GCGCG-UCGCGCG----CGCa--CUAGa---GCCCc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 84044 | 0.66 | 0.713042 |
Target: 5'- gGCGgAG-GCGCGCacGAcgccCUCGGGGa -3' miRNA: 3'- gCGCgUCgCGCGCGcaCUa---GAGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 60200 | 0.66 | 0.693696 |
Target: 5'- gGUGCGGCGCGgGgGggGAcggCUUGGGc -3' miRNA: 3'- gCGCGUCGCGCgCgCa-CUa--GAGCCCc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 56038 | 0.66 | 0.703397 |
Target: 5'- aCGUGCAGgGCGUGCGg---UUCGuGGa -3' miRNA: 3'- -GCGCGUCgCGCGCGCacuaGAGC-CCc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 77463 | 0.66 | 0.664339 |
Target: 5'- uCGUgGUGGCGUGCGCGgcgacgcGUCcCGGGGc -3' miRNA: 3'- -GCG-CGUCGCGCGCGCac-----UAGaGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 7081 | 0.66 | 0.693696 |
Target: 5'- aCGUGCAGCGCGgucaugucguaCGCGUcaGA-CUCGcGGa -3' miRNA: 3'- -GCGCGUCGCGC-----------GCGCA--CUaGAGC-CCc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 859 | 0.67 | 0.654494 |
Target: 5'- gCGgGCAGCGCGgGCGcGG-C-CGGGcGg -3' miRNA: 3'- -GCgCGUCGCGCgCGCaCUaGaGCCC-C- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 97776 | 0.68 | 0.559203 |
Target: 5'- gCGCGCuGCGCGagaaggaccgcuuCGUGUGGuguccacgguguucuUCUCGGGc -3' miRNA: 3'- -GCGCGuCGCGC-------------GCGCACU---------------AGAGCCCc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 10445 | 0.68 | 0.595332 |
Target: 5'- gGCGguGCGCGCGuCGUGcgC-CaGGa -3' miRNA: 3'- gCGCguCGCGCGC-GCACuaGaGcCCc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 21372 | 0.67 | 0.605168 |
Target: 5'- uGCGCAGaucaGCGCccaagaCGcGAUCUCGGcGGc -3' miRNA: 3'- gCGCGUCg---CGCGc-----GCaCUAGAGCC-CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 83975 | 0.67 | 0.605168 |
Target: 5'- aGCgGCGGCGCGgGCGggcacGUCUgggccugcaCGGGGc -3' miRNA: 3'- gCG-CGUCGCGCgCGCac---UAGA---------GCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 94789 | 0.67 | 0.605168 |
Target: 5'- aGCaGCAGCGCGCGCGc-GUCgccggcaCGGaGGc -3' miRNA: 3'- gCG-CGUCGCGCGCGCacUAGa------GCC-CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 80204 | 0.67 | 0.605168 |
Target: 5'- uCGCGCgucucguugaugAGCGCGCGCacgcggUCGGGGu -3' miRNA: 3'- -GCGCG------------UCGCGCGCGcacuagAGCCCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 69295 | 0.67 | 0.615023 |
Target: 5'- aCGgGCAGUuCGCGCGgGAgaaggccuUCUCGGuGGu -3' miRNA: 3'- -GCgCGUCGcGCGCGCaCU--------AGAGCC-CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 18713 | 0.67 | 0.615023 |
Target: 5'- aCGCGgcCAGuCGCGCGCuGUG--CUCGGaGGa -3' miRNA: 3'- -GCGC--GUC-GCGCGCG-CACuaGAGCC-CC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 96876 | 0.67 | 0.634763 |
Target: 5'- cCGCGCGGaUGCGCgGCGUGGaCgUCGGcGa -3' miRNA: 3'- -GCGCGUC-GCGCG-CGCACUaG-AGCC-Cc -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 61239 | 0.67 | 0.644633 |
Target: 5'- aGcCGCAGCGUGCccucCGUGAcCUCGacGGGc -3' miRNA: 3'- gC-GCGUCGCGCGc---GCACUaGAGC--CCC- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 42752 | 0.67 | 0.653509 |
Target: 5'- gCGUGCGGUGCgggucccGCGCGUucgugugCUCGGGcGg -3' miRNA: 3'- -GCGCGUCGCG-------CGCGCAcua----GAGCCC-C- -5' |
|||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 989 | 0.67 | 0.654494 |
Target: 5'- gGCGCGGCGCGCG-GaGGg--CGGGc -3' miRNA: 3'- gCGCGUCGCGCGCgCaCUagaGCCCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home