miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 88872 0.66 0.692724
Target:  5'- cCGCGCAGUGgaGCGUcagcaccgggucgGUGGUCUCGcaGGu -3'
miRNA:   3'- -GCGCGUCGCg-CGCG-------------CACUAGAGCc-CC- -5'
25687 5' -60.9 NC_005337.1 + 49720 0.66 0.690777
Target:  5'- aCGCGCuGC-CGCGCGUucguuuccacagccGccgcGUcCUCGGGGa -3'
miRNA:   3'- -GCGCGuCGcGCGCGCA--------------C----UA-GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 23052 0.66 0.683948
Target:  5'- gGCGCccuucaGGaugGCGCuCGUGGgcggCUCGGGGu -3'
miRNA:   3'- gCGCG------UCg--CGCGcGCACUa---GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 68358 0.66 0.683948
Target:  5'- gGCGCGGuCGCGauCGCGUGGag-CGaGGGc -3'
miRNA:   3'- gCGCGUC-GCGC--GCGCACUagaGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 18850 0.66 0.674159
Target:  5'- uCGC-CAGCaCGCGCcgcaUGAUaUCGGGGg -3'
miRNA:   3'- -GCGcGUCGcGCGCGc---ACUAgAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 69839 0.66 0.674159
Target:  5'- gGCGCAGaucaGCGCcuugGCGUGGggcgCGGGu -3'
miRNA:   3'- gCGCGUCg---CGCG----CGCACUaga-GCCCc -5'
25687 5' -60.9 NC_005337.1 + 118943 0.66 0.674159
Target:  5'- gGCGCAGCGUGCgucGCGcGAUauuccaCGGGu -3'
miRNA:   3'- gCGCGUCGCGCG---CGCaCUAga----GCCCc -5'
25687 5' -60.9 NC_005337.1 + 38254 0.66 0.674159
Target:  5'- aGaCGCGGCGCGCGUucGcgCUCGcGGc -3'
miRNA:   3'- gC-GCGUCGCGCGCGcaCuaGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 55727 0.66 0.674159
Target:  5'- aCGCGCacGGCGCGCcCGUGua--CGGGu -3'
miRNA:   3'- -GCGCG--UCGCGCGcGCACuagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 41285 0.66 0.674159
Target:  5'- uCGCGCAGCGCcaucacggccaGCGCGUuGUCcagCGuGGc -3'
miRNA:   3'- -GCGCGUCGCG-----------CGCGCAcUAGa--GC-CCc -5'
25687 5' -60.9 NC_005337.1 + 34969 0.66 0.674159
Target:  5'- aGCGCAGCGaGUGCG-GAaCgCGGGu -3'
miRNA:   3'- gCGCGUCGCgCGCGCaCUaGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 105166 0.66 0.670234
Target:  5'- gGCGCuGCaCG-GCGUGGUCgaccccugcuucgCGGGGu -3'
miRNA:   3'- gCGCGuCGcGCgCGCACUAGa------------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 95307 0.66 0.664339
Target:  5'- gCGCGCGGCGCGCuguuGCGcucGUCgUCGGu- -3'
miRNA:   3'- -GCGCGUCGCGCG----CGCac-UAG-AGCCcc -5'
25687 5' -60.9 NC_005337.1 + 81783 0.66 0.664339
Target:  5'- uGCGCAugGCGCGCaUGAgccggcUCUCGcGGGc -3'
miRNA:   3'- gCGCGUcgCGCGCGcACU------AGAGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 37094 0.66 0.664339
Target:  5'- -cCGCAGCGUGCGgaaGU--UgUCGGGGg -3'
miRNA:   3'- gcGCGUCGCGCGCg--CAcuAgAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 77463 0.66 0.664339
Target:  5'- uCGUgGUGGCGUGCGCGgcgacgcGUCcCGGGGc -3'
miRNA:   3'- -GCG-CGUCGCGCGCGCac-----UAGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 77907 0.66 0.664339
Target:  5'- aCGCGCAGCGCGUGCacuacgUCGGu- -3'
miRNA:   3'- -GCGCGUCGCGCGCGcacuagAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 10324 0.66 0.663355
Target:  5'- uGUGCAGCGCGaccggcuCGCG-GggCgUGGGGa -3'
miRNA:   3'- gCGCGUCGCGC-------GCGCaCuaGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 989 0.67 0.654494
Target:  5'- gGCGCGGCGCGCG-GaGGg--CGGGc -3'
miRNA:   3'- gCGCGUCGCGCGCgCaCUagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 859 0.67 0.654494
Target:  5'- gCGgGCAGCGCGgGCGcGG-C-CGGGcGg -3'
miRNA:   3'- -GCgCGUCGCGCgCGCaCUaGaGCCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.