miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25693 3' -54.7 NC_005337.1 + 42521 0.65 0.926424
Target:  5'- -cCAGCUUCGAgGCgcacgcgcgcgugGCCGGggGCuacguGCGCu -3'
miRNA:   3'- gaGUCGAAGCU-CG-------------UGGCCuaCG-----UGUG- -5'
25693 3' -54.7 NC_005337.1 + 56341 0.66 0.921386
Target:  5'- gCUCaAGCUgcccacgcucuUCG-GCACCGacguaGUGCACGCg -3'
miRNA:   3'- -GAG-UCGA-----------AGCuCGUGGCc----UACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 117523 0.66 0.921386
Target:  5'- aUCAGC--CGGcGCGCCGuGAccGCGCACa -3'
miRNA:   3'- gAGUCGaaGCU-CGUGGC-CUa-CGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 9750 0.66 0.921386
Target:  5'- -gCAGCgcgcgUCGgccGGCGCCGGGUugGCAC-Cg -3'
miRNA:   3'- gaGUCGa----AGC---UCGUGGCCUA--CGUGuG- -5'
25693 3' -54.7 NC_005337.1 + 69064 0.66 0.921386
Target:  5'- -cCAGCguggCcAGCGgCGGGUGCACGa -3'
miRNA:   3'- gaGUCGaa--GcUCGUgGCCUACGUGUg -5'
25693 3' -54.7 NC_005337.1 + 11496 0.66 0.920814
Target:  5'- uUCAGUUaugcgaagacgcgUCGuGCGCCGGGcaGCGCAg -3'
miRNA:   3'- gAGUCGA-------------AGCuCGUGGCCUa-CGUGUg -5'
25693 3' -54.7 NC_005337.1 + 17249 0.66 0.91555
Target:  5'- -gCAGCgUCGgcAGCGcCCGGAgcguggccugGCGCACg -3'
miRNA:   3'- gaGUCGaAGC--UCGU-GGCCUa---------CGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 96075 0.66 0.91555
Target:  5'- aCUUGGCUcCGGcGUACaCGGG-GCACGCg -3'
miRNA:   3'- -GAGUCGAaGCU-CGUG-GCCUaCGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 66443 0.66 0.91555
Target:  5'- -gCGGuCUUCGGaCACCGaaaacggauGAUGCGCGCg -3'
miRNA:   3'- gaGUC-GAAGCUcGUGGC---------CUACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 103319 0.66 0.91555
Target:  5'- aUCAaCUUCG-GCGCCGGGcgGCuCACc -3'
miRNA:   3'- gAGUcGAAGCuCGUGGCCUa-CGuGUG- -5'
25693 3' -54.7 NC_005337.1 + 15905 0.66 0.909464
Target:  5'- -cCAGCa--GGGCGCCGGAgGCAgaGCg -3'
miRNA:   3'- gaGUCGaagCUCGUGGCCUaCGUg-UG- -5'
25693 3' -54.7 NC_005337.1 + 90499 0.66 0.909464
Target:  5'- gUUGGCgaugcUGAGCuggaACCGGAUGCGCuGCa -3'
miRNA:   3'- gAGUCGaa---GCUCG----UGGCCUACGUG-UG- -5'
25693 3' -54.7 NC_005337.1 + 121521 0.66 0.909464
Target:  5'- -gCGGuCUUCGGcGCgAUCGGAcuuUGCACGCu -3'
miRNA:   3'- gaGUC-GAAGCU-CG-UGGCCU---ACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 99694 0.66 0.909464
Target:  5'- -aCAGCUUCGAcGCGC----UGCGCGCg -3'
miRNA:   3'- gaGUCGAAGCU-CGUGgccuACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 79332 0.66 0.908841
Target:  5'- --gGGCUUCGuGUacACCGagagcgaGGUGCACGCa -3'
miRNA:   3'- gagUCGAAGCuCG--UGGC-------CUACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 2147 0.66 0.903129
Target:  5'- -cCAGC-UCGcAGUugCGGAgccugccGCGCACg -3'
miRNA:   3'- gaGUCGaAGC-UCGugGCCUa------CGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 56851 0.66 0.903129
Target:  5'- -aCGGCUUCGugcgcauGCACCGccaGCGCAUg -3'
miRNA:   3'- gaGUCGAAGCu------CGUGGCcuaCGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 68120 0.66 0.896547
Target:  5'- aCUCGGggUCGcGGgGCCGGuggccGCGCGCg -3'
miRNA:   3'- -GAGUCgaAGC-UCgUGGCCua---CGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 49717 0.66 0.896547
Target:  5'- gCUCGGCgcgccggUUGAGCgggacGCCGGAcacgGUGCGCc -3'
miRNA:   3'- -GAGUCGa------AGCUCG-----UGGCCUa---CGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 34732 0.66 0.896547
Target:  5'- cCUC-GCg-CGAGCAgUCGGcgGCGCACc -3'
miRNA:   3'- -GAGuCGaaGCUCGU-GGCCuaCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.