miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25693 3' -54.7 NC_005337.1 + 52478 0.66 0.896547
Target:  5'- -gCGGCgcccgCGAGaGCCGGcucAUGCGCGCc -3'
miRNA:   3'- gaGUCGaa---GCUCgUGGCC---UACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 68120 0.66 0.896547
Target:  5'- aCUCGGggUCGcGGgGCCGGuggccGCGCGCg -3'
miRNA:   3'- -GAGUCgaAGC-UCgUGGCCua---CGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 110016 0.67 0.889723
Target:  5'- aCUCAGCgUCGGGaGCauGAUGUugGCg -3'
miRNA:   3'- -GAGUCGaAGCUCgUGgcCUACGugUG- -5'
25693 3' -54.7 NC_005337.1 + 4769 0.67 0.889723
Target:  5'- -gCAGCgcgUCGAugacGCGCgGGuccGUGCACGCc -3'
miRNA:   3'- gaGUCGa--AGCU----CGUGgCC---UACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 31244 0.67 0.889027
Target:  5'- aUCAGCaggUCGcggcuccGGCAgCGGAUGCgguGCGCc -3'
miRNA:   3'- gAGUCGa--AGC-------UCGUgGCCUACG---UGUG- -5'
25693 3' -54.7 NC_005337.1 + 19526 0.67 0.88266
Target:  5'- --gAGCacCGAGUGCCGGAgcccguccaGCACGCg -3'
miRNA:   3'- gagUCGaaGCUCGUGGCCUa--------CGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 5469 0.67 0.875363
Target:  5'- -aCGGUggugCG-GCACCGcucGGUGCGCACg -3'
miRNA:   3'- gaGUCGaa--GCuCGUGGC---CUACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 117159 0.67 0.875363
Target:  5'- -aCGGCggCGAGUucuGCCGG--GCGCACu -3'
miRNA:   3'- gaGUCGaaGCUCG---UGGCCuaCGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 58502 0.67 0.875363
Target:  5'- -gCAGCUUaaCGAGCGgCGGAauCACGCc -3'
miRNA:   3'- gaGUCGAA--GCUCGUgGCCUacGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 120515 0.67 0.867836
Target:  5'- cCUCGccGCgUUCGGGCGCgCGGAgauCACGCu -3'
miRNA:   3'- -GAGU--CG-AAGCUCGUG-GCCUac-GUGUG- -5'
25693 3' -54.7 NC_005337.1 + 48877 0.67 0.867836
Target:  5'- uCUCGGCggaGAGCGCCGc--GCACGg -3'
miRNA:   3'- -GAGUCGaagCUCGUGGCcuaCGUGUg -5'
25693 3' -54.7 NC_005337.1 + 131817 0.67 0.860086
Target:  5'- --gGGCUUCG-GCAacaCGGcgcUGCACACg -3'
miRNA:   3'- gagUCGAAGCuCGUg--GCCu--ACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 106238 0.67 0.860086
Target:  5'- -gCGGCggUCGcGUGCCGGcgGCAgGCg -3'
miRNA:   3'- gaGUCGa-AGCuCGUGGCCuaCGUgUG- -5'
25693 3' -54.7 NC_005337.1 + 102130 0.67 0.860086
Target:  5'- aUCAuCUUCGAGUacGCCGaGGUGUACGu -3'
miRNA:   3'- gAGUcGAAGCUCG--UGGC-CUACGUGUg -5'
25693 3' -54.7 NC_005337.1 + 7050 0.67 0.860086
Target:  5'- gUCGGgg-CGGGCGgCGGGguUGCGCGCg -3'
miRNA:   3'- gAGUCgaaGCUCGUgGCCU--ACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 46240 0.67 0.860086
Target:  5'- aUCAGCguggCGAGCGugacCUGGAUggugggccgGCACACc -3'
miRNA:   3'- gAGUCGaa--GCUCGU----GGCCUA---------CGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 103142 0.68 0.85212
Target:  5'- aUCAGCUacuUCGAG-ACCGGGUuCGCGg -3'
miRNA:   3'- gAGUCGA---AGCUCgUGGCCUAcGUGUg -5'
25693 3' -54.7 NC_005337.1 + 66520 0.68 0.85212
Target:  5'- -gCAGCcggcCGAGaCGCUGGAgcUGCGCGCc -3'
miRNA:   3'- gaGUCGaa--GCUC-GUGGCCU--ACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 121569 0.68 0.85212
Target:  5'- gUCGcCUUcgcCGAGCACCGcAUGUACGCg -3'
miRNA:   3'- gAGUcGAA---GCUCGUGGCcUACGUGUG- -5'
25693 3' -54.7 NC_005337.1 + 115455 0.68 0.847238
Target:  5'- -cCGGCguaCGAcgcgcuggcguacucGCACCGG-UGCACGCa -3'
miRNA:   3'- gaGUCGaa-GCU---------------CGUGGCCuACGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.