miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25693 5' -54.5 NC_005337.1 + 41507 0.66 0.948966
Target:  5'- gCGAUGgagCGCauccgCGCGGccauccgCUCGCGGAUGu -3'
miRNA:   3'- -GCUACa--GCG-----GCGUCaa-----GAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 12343 0.66 0.948966
Target:  5'- uGGUGcagCGCCGUccgUC-CGCGGACGu -3'
miRNA:   3'- gCUACa--GCGGCGucaAGaGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 13289 0.66 0.948966
Target:  5'- gCGAUG-CGCaggaggGCGGg-CUCGCAGugGc -3'
miRNA:   3'- -GCUACaGCGg-----CGUCaaGAGCGUCugC- -5'
25693 5' -54.5 NC_005337.1 + 48294 0.66 0.948966
Target:  5'- cCGcgGUCGCgccuccgcaUGCGGUg--CGCGGGCGc -3'
miRNA:   3'- -GCuaCAGCG---------GCGUCAagaGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 52947 0.66 0.94724
Target:  5'- aGAUGcuccagcccuucgCGCCGCcGUUCUCcGCGGAg- -3'
miRNA:   3'- gCUACa------------GCGGCGuCAAGAG-CGUCUgc -5'
25693 5' -54.5 NC_005337.1 + 8417 0.66 0.944578
Target:  5'- gGAUGUCcgcaCCGCGGggaUCGCAuccGGCGg -3'
miRNA:   3'- gCUACAGc---GGCGUCaagAGCGU---CUGC- -5'
25693 5' -54.5 NC_005337.1 + 84081 0.66 0.944578
Target:  5'- aGAcGcgCGCCGCAGag--CGCGGACa -3'
miRNA:   3'- gCUaCa-GCGGCGUCaagaGCGUCUGc -5'
25693 5' -54.5 NC_005337.1 + 38564 0.66 0.944578
Target:  5'- cCGggGUCGCUGCug--CgCGCGGACu -3'
miRNA:   3'- -GCuaCAGCGGCGucaaGaGCGUCUGc -5'
25693 5' -54.5 NC_005337.1 + 25275 0.66 0.944578
Target:  5'- aCGcgG-CGCUGgAGUUCgcgCGCAcGGCGg -3'
miRNA:   3'- -GCuaCaGCGGCgUCAAGa--GCGU-CUGC- -5'
25693 5' -54.5 NC_005337.1 + 78879 0.66 0.944578
Target:  5'- cCGGuUGUCGCCGUGGUacacguUC-CGCuGGCa -3'
miRNA:   3'- -GCU-ACAGCGGCGUCA------AGaGCGuCUGc -5'
25693 5' -54.5 NC_005337.1 + 73163 0.66 0.944578
Target:  5'- uGggGcgCGCCGUgcgcaAGUUCUCGUacacGGACGu -3'
miRNA:   3'- gCuaCa-GCGGCG-----UCAAGAGCG----UCUGC- -5'
25693 5' -54.5 NC_005337.1 + 13064 0.66 0.944578
Target:  5'- -cGUGUCGCUGCuGcg--CGCGGGCGc -3'
miRNA:   3'- gcUACAGCGGCGuCaagaGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 109250 0.66 0.939951
Target:  5'- uCGGUGUcCGCCGCGcgcacgUCgaaGCGGugGa -3'
miRNA:   3'- -GCUACA-GCGGCGUca----AGag-CGUCugC- -5'
25693 5' -54.5 NC_005337.1 + 29675 0.66 0.939951
Target:  5'- gCGGUGgCGCCGUAug-CUCGCcgccGACGa -3'
miRNA:   3'- -GCUACaGCGGCGUcaaGAGCGu---CUGC- -5'
25693 5' -54.5 NC_005337.1 + 65151 0.66 0.935081
Target:  5'- cCGccGUgGaCCGCGGcUCgccCGCAGACGa -3'
miRNA:   3'- -GCuaCAgC-GGCGUCaAGa--GCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 38512 0.66 0.935081
Target:  5'- aCGAcGUCGCCGCGa---UCGCGGGg- -3'
miRNA:   3'- -GCUaCAGCGGCGUcaagAGCGUCUgc -5'
25693 5' -54.5 NC_005337.1 + 11397 0.66 0.92461
Target:  5'- uGAUG-CGCCaggGCcccgGGUUC-CGCAGGCGc -3'
miRNA:   3'- gCUACaGCGG---CG----UCAAGaGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 90522 0.66 0.92461
Target:  5'- gGAUG-CGCUGCAGcuucagcugcUUCUCGguG-CGg -3'
miRNA:   3'- gCUACaGCGGCGUC----------AAGAGCguCuGC- -5'
25693 5' -54.5 NC_005337.1 + 85721 0.66 0.92461
Target:  5'- -cGUGaCGUCGCAGUccgCcgUCGCGGACGc -3'
miRNA:   3'- gcUACaGCGGCGUCAa--G--AGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 23683 0.66 0.92461
Target:  5'- --cUGcUCG-CGCAGUUCUCGCacaugaAGACGc -3'
miRNA:   3'- gcuAC-AGCgGCGUCAAGAGCG------UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.