miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25693 5' -54.5 NC_005337.1 + 29429 1.1 0.003486
Target:  5'- gCGAUGUCGCCGCAGUUCUCGCAGACGa -3'
miRNA:   3'- -GCUACAGCGGCGUCAAGAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 109042 0.92 0.049219
Target:  5'- gGAUGUUGUCGUAGUUCUCGUAGACGg -3'
miRNA:   3'- gCUACAGCGGCGUCAAGAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 71164 0.79 0.32497
Target:  5'- aGAUGUCGUCGCuGggCUCGguGGCa -3'
miRNA:   3'- gCUACAGCGGCGuCaaGAGCguCUGc -5'
25693 5' -54.5 NC_005337.1 + 31527 0.74 0.557941
Target:  5'- aCGGUGcaggUGCCGCGGUUCUUGUgguuGGCGa -3'
miRNA:   3'- -GCUACa---GCGGCGUCAAGAGCGu---CUGC- -5'
25693 5' -54.5 NC_005337.1 + 19910 0.73 0.588584
Target:  5'- aGG-GUCGCCGCucuggaAGUUCUCGUAGAg- -3'
miRNA:   3'- gCUaCAGCGGCG------UCAAGAGCGUCUgc -5'
25693 5' -54.5 NC_005337.1 + 97613 0.73 0.640199
Target:  5'- aCGGUG--GCCGCGGccUUCGCGGACGg -3'
miRNA:   3'- -GCUACagCGGCGUCaaGAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 117090 0.72 0.681418
Target:  5'- -cAUGgccgCGCUGaagauGUUCUCGCAGACGg -3'
miRNA:   3'- gcUACa---GCGGCgu---CAAGAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 123093 0.71 0.701814
Target:  5'- aCGAUGuacuUCG-CGCAGUUCUgGCAcGGCGa -3'
miRNA:   3'- -GCUAC----AGCgGCGUCAAGAgCGU-CUGC- -5'
25693 5' -54.5 NC_005337.1 + 33437 0.71 0.701814
Target:  5'- uGAUcUCGCCGUAGUcgaUCUUGCAG-CGc -3'
miRNA:   3'- gCUAcAGCGGCGUCA---AGAGCGUCuGC- -5'
25693 5' -54.5 NC_005337.1 + 25036 0.71 0.711927
Target:  5'- gCGccGUCGCCaCGGgcccucCUCGCAGACGu -3'
miRNA:   3'- -GCuaCAGCGGcGUCaa----GAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 39195 0.71 0.72197
Target:  5'- ---cGUCGCCGCGGg-CUaCGCGGACc -3'
miRNA:   3'- gcuaCAGCGGCGUCaaGA-GCGUCUGc -5'
25693 5' -54.5 NC_005337.1 + 25592 0.71 0.731935
Target:  5'- uCGGUGUCGCCGUAGacgCU-GCGGAa- -3'
miRNA:   3'- -GCUACAGCGGCGUCaa-GAgCGUCUgc -5'
25693 5' -54.5 NC_005337.1 + 120840 0.71 0.731935
Target:  5'- gGAagGUCGCCGUcaAGUgCUCGCuGGCGu -3'
miRNA:   3'- gCUa-CAGCGGCG--UCAaGAGCGuCUGC- -5'
25693 5' -54.5 NC_005337.1 + 84380 0.71 0.741812
Target:  5'- uCGGUgGUCGCCG-GGU--UCGCGGACGa -3'
miRNA:   3'- -GCUA-CAGCGGCgUCAagAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 39100 0.71 0.75159
Target:  5'- ---gGUCGCCGUGGcgcggaagCUCGCGGGCa -3'
miRNA:   3'- gcuaCAGCGGCGUCaa------GAGCGUCUGc -5'
25693 5' -54.5 NC_005337.1 + 78402 0.71 0.75159
Target:  5'- aGAUGUCGCCGCcAGagaacuuggUCUUGcCGGGCu -3'
miRNA:   3'- gCUACAGCGGCG-UCa--------AGAGC-GUCUGc -5'
25693 5' -54.5 NC_005337.1 + 111302 0.7 0.761262
Target:  5'- ---cGUCGCUGUAGUcCUCGaGGACGa -3'
miRNA:   3'- gcuaCAGCGGCGUCAaGAGCgUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 81809 0.7 0.761262
Target:  5'- uCGcgGgCGCCGCGGcUCagCGCGGACa -3'
miRNA:   3'- -GCuaCaGCGGCGUCaAGa-GCGUCUGc -5'
25693 5' -54.5 NC_005337.1 + 77056 0.7 0.780244
Target:  5'- ---cGUUaGCCGCcgAGUUUUCGCGGGCGc -3'
miRNA:   3'- gcuaCAG-CGGCG--UCAAGAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 37500 0.7 0.789537
Target:  5'- aGcAUGUUGCUGCGGaagcgcucggacUUCUCGUGGAUGg -3'
miRNA:   3'- gC-UACAGCGGCGUC------------AAGAGCGUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.