miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25693 5' -54.5 NC_005337.1 + 4331 0.67 0.913164
Target:  5'- aGggGUCGgCGCccuggacgaugAGcUUUUCGCAGGCGg -3'
miRNA:   3'- gCuaCAGCgGCG-----------UC-AAGAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 8417 0.66 0.944578
Target:  5'- gGAUGUCcgcaCCGCGGggaUCGCAuccGGCGg -3'
miRNA:   3'- gCUACAGc---GGCGUCaagAGCGU---CUGC- -5'
25693 5' -54.5 NC_005337.1 + 11397 0.66 0.92461
Target:  5'- uGAUG-CGCCaggGCcccgGGUUC-CGCAGGCGc -3'
miRNA:   3'- gCUACaGCGG---CG----UCAAGaGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 12343 0.66 0.948966
Target:  5'- uGGUGcagCGCCGUccgUC-CGCGGACGu -3'
miRNA:   3'- gCUACa--GCGGCGucaAGaGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 13064 0.66 0.944578
Target:  5'- -cGUGUCGCUGCuGcg--CGCGGGCGc -3'
miRNA:   3'- gcUACAGCGGCGuCaagaGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 13289 0.66 0.948966
Target:  5'- gCGAUG-CGCaggaggGCGGg-CUCGCAGugGc -3'
miRNA:   3'- -GCUACaGCGg-----CGUCaaGAGCGUCugC- -5'
25693 5' -54.5 NC_005337.1 + 19910 0.73 0.588584
Target:  5'- aGG-GUCGCCGCucuggaAGUUCUCGUAGAg- -3'
miRNA:   3'- gCUaCAGCGGCG------UCAAGAGCGUCUgc -5'
25693 5' -54.5 NC_005337.1 + 23683 0.66 0.92461
Target:  5'- --cUGcUCG-CGCAGUUCUCGCacaugaAGACGc -3'
miRNA:   3'- gcuAC-AGCgGCGUCAAGAGCG------UCUGC- -5'
25693 5' -54.5 NC_005337.1 + 24506 0.68 0.865631
Target:  5'- gCGAgGUCGuccacaCCGCGGacgacCUCGCGGACGu -3'
miRNA:   3'- -GCUaCAGC------GGCGUCaa---GAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 25036 0.71 0.711927
Target:  5'- gCGccGUCGCCaCGGgcccucCUCGCAGACGu -3'
miRNA:   3'- -GCuaCAGCGGcGUCaa----GAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 25275 0.66 0.944578
Target:  5'- aCGcgG-CGCUGgAGUUCgcgCGCAcGGCGg -3'
miRNA:   3'- -GCuaCaGCGGCgUCAAGa--GCGU-CUGC- -5'
25693 5' -54.5 NC_005337.1 + 25592 0.71 0.731935
Target:  5'- uCGGUGUCGCCGUAGacgCU-GCGGAa- -3'
miRNA:   3'- -GCUACAGCGGCGUCaa-GAgCGUCUgc -5'
25693 5' -54.5 NC_005337.1 + 29429 1.1 0.003486
Target:  5'- gCGAUGUCGCCGCAGUUCUCGCAGACGa -3'
miRNA:   3'- -GCUACAGCGGCGUCAAGAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 29675 0.66 0.939951
Target:  5'- gCGGUGgCGCCGUAug-CUCGCcgccGACGa -3'
miRNA:   3'- -GCUACaGCGGCGUcaaGAGCGu---CUGC- -5'
25693 5' -54.5 NC_005337.1 + 31527 0.74 0.557941
Target:  5'- aCGGUGcaggUGCCGCGGUUCUUGUgguuGGCGa -3'
miRNA:   3'- -GCUACa---GCGGCGUCAAGAGCGu---CUGC- -5'
25693 5' -54.5 NC_005337.1 + 33437 0.71 0.701814
Target:  5'- uGAUcUCGCCGUAGUcgaUCUUGCAG-CGc -3'
miRNA:   3'- gCUAcAGCGGCGUCA---AGAGCGUCuGC- -5'
25693 5' -54.5 NC_005337.1 + 35769 0.68 0.857942
Target:  5'- cCGGccUUGCCGCGGaaCUCGgGGACGu -3'
miRNA:   3'- -GCUacAGCGGCGUCaaGAGCgUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 37500 0.7 0.789537
Target:  5'- aGcAUGUUGCUGCGGaagcgcucggacUUCUCGUGGAUGg -3'
miRNA:   3'- gC-UACAGCGGCGUC------------AAGAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 38512 0.66 0.935081
Target:  5'- aCGAcGUCGCCGCGa---UCGCGGGg- -3'
miRNA:   3'- -GCUaCAGCGGCGUcaagAGCGUCUgc -5'
25693 5' -54.5 NC_005337.1 + 38564 0.66 0.944578
Target:  5'- cCGggGUCGCUGCug--CgCGCGGACu -3'
miRNA:   3'- -GCuaCAGCGGCGucaaGaGCGUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.