miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25693 5' -54.5 NC_005337.1 + 52146 0.67 0.921279
Target:  5'- aCGcGUGUCGCgcgcucaugcgccagCGCGGcUUCgacggcgCGCAGACGg -3'
miRNA:   3'- -GC-UACAGCG---------------GCGUC-AAGa------GCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 71467 0.69 0.82517
Target:  5'- ---cGU-GCCGCAGgUCUCGCuGGACGc -3'
miRNA:   3'- gcuaCAgCGGCGUCaAGAGCG-UCUGC- -5'
25693 5' -54.5 NC_005337.1 + 118062 0.69 0.82517
Target:  5'- gCGAaGUCGCCGCGGgUgUUGUAGAg- -3'
miRNA:   3'- -GCUaCAGCGGCGUCaAgAGCGUCUgc -5'
25693 5' -54.5 NC_005337.1 + 75574 0.69 0.841945
Target:  5'- uGAUccgcUCGCCGUccguGUUgUCGCAGGCGu -3'
miRNA:   3'- gCUAc---AGCGGCGu---CAAgAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 35769 0.68 0.857942
Target:  5'- cCGGccUUGCCGCGGaaCUCGgGGACGu -3'
miRNA:   3'- -GCUacAGCGGCGUCaaGAGCgUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 24506 0.68 0.865631
Target:  5'- gCGAgGUCGuccacaCCGCGGacgacCUCGCGGACGu -3'
miRNA:   3'- -GCUaCAGC------GGCGUCaa---GAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 121915 0.67 0.900751
Target:  5'- gCGAcG-CGCCGCGacgUC-CGCGGACGg -3'
miRNA:   3'- -GCUaCaGCGGCGUca-AGaGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 97099 0.67 0.919009
Target:  5'- cCGcAUGcuggUGCCGCAGUggcgCUCGgCGGugGc -3'
miRNA:   3'- -GC-UACa---GCGGCGUCAa---GAGC-GUCugC- -5'
25693 5' -54.5 NC_005337.1 + 128224 0.67 0.919009
Target:  5'- ---cGUgGCCGCGGg---CGCGGACa -3'
miRNA:   3'- gcuaCAgCGGCGUCaagaGCGUCUGc -5'
25693 5' -54.5 NC_005337.1 + 122203 0.69 0.81651
Target:  5'- ----aUCGCCGCGGg---CGCGGACGu -3'
miRNA:   3'- gcuacAGCGGCGUCaagaGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 83794 0.69 0.807678
Target:  5'- uGAUGUUGaCGCGGUcugaugcgcUCUCGguGACc -3'
miRNA:   3'- gCUACAGCgGCGUCA---------AGAGCguCUGc -5'
25693 5' -54.5 NC_005337.1 + 37500 0.7 0.789537
Target:  5'- aGcAUGUUGCUGCGGaagcgcucggacUUCUCGUGGAUGg -3'
miRNA:   3'- gC-UACAGCGGCGUC------------AAGAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 97613 0.73 0.640199
Target:  5'- aCGGUG--GCCGCGGccUUCGCGGACGg -3'
miRNA:   3'- -GCUACagCGGCGUCaaGAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 123093 0.71 0.701814
Target:  5'- aCGAUGuacuUCG-CGCAGUUCUgGCAcGGCGa -3'
miRNA:   3'- -GCUAC----AGCgGCGUCAAGAgCGU-CUGC- -5'
25693 5' -54.5 NC_005337.1 + 25036 0.71 0.711927
Target:  5'- gCGccGUCGCCaCGGgcccucCUCGCAGACGu -3'
miRNA:   3'- -GCuaCAGCGGcGUCaa----GAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 25592 0.71 0.731935
Target:  5'- uCGGUGUCGCCGUAGacgCU-GCGGAa- -3'
miRNA:   3'- -GCUACAGCGGCGUCaa-GAgCGUCUgc -5'
25693 5' -54.5 NC_005337.1 + 84380 0.71 0.741812
Target:  5'- uCGGUgGUCGCCG-GGU--UCGCGGACGa -3'
miRNA:   3'- -GCUA-CAGCGGCgUCAagAGCGUCUGC- -5'
25693 5' -54.5 NC_005337.1 + 39100 0.71 0.75159
Target:  5'- ---gGUCGCCGUGGcgcggaagCUCGCGGGCa -3'
miRNA:   3'- gcuaCAGCGGCGUCaa------GAGCGUCUGc -5'
25693 5' -54.5 NC_005337.1 + 81809 0.7 0.761262
Target:  5'- uCGcgGgCGCCGCGGcUCagCGCGGACa -3'
miRNA:   3'- -GCuaCaGCGGCGUCaAGa-GCGUCUGc -5'
25693 5' -54.5 NC_005337.1 + 77056 0.7 0.780244
Target:  5'- ---cGUUaGCCGCcgAGUUUUCGCGGGCGc -3'
miRNA:   3'- gcuaCAG-CGGCG--UCAAGAGCGUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.