miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 3' -54.6 NC_005337.1 + 91089 0.67 0.923578
Target:  5'- -cGGUGACCGuGCuCGgGAUgGGCGu -3'
miRNA:   3'- cuCCACUGGUuCGuGCgCUAgCUGCc -5'
25695 3' -54.6 NC_005337.1 + 69058 0.67 0.917952
Target:  5'- -cGGUGGCCA---GCGUGGccagCGGCGGg -3'
miRNA:   3'- cuCCACUGGUucgUGCGCUa---GCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 24627 0.67 0.917952
Target:  5'- gGAGGUGACggaaAAGCugGUGGacgcgcUCG-CGGc -3'
miRNA:   3'- -CUCCACUGg---UUCGugCGCU------AGCuGCC- -5'
25695 3' -54.6 NC_005337.1 + 33712 0.67 0.917952
Target:  5'- aAGGUGguggcGCCGAGgAUGCGGUCG-CGc -3'
miRNA:   3'- cUCCAC-----UGGUUCgUGCGCUAGCuGCc -5'
25695 3' -54.6 NC_005337.1 + 124504 0.67 0.917952
Target:  5'- -cGGUGA-CAGGCAuCGCGAcgauaccgacaUCGACGc -3'
miRNA:   3'- cuCCACUgGUUCGU-GCGCU-----------AGCUGCc -5'
25695 3' -54.6 NC_005337.1 + 54631 0.67 0.916217
Target:  5'- gGAGGcagUGACCGuGCACGCGuAcaucaagacccccuUCGACGcGg -3'
miRNA:   3'- -CUCC---ACUGGUuCGUGCGC-U--------------AGCUGC-C- -5'
25695 3' -54.6 NC_005337.1 + 81480 0.67 0.916217
Target:  5'- uAGcGUGACgGAGUACGCGGcguaccacgacgcgUCG-CGGg -3'
miRNA:   3'- cUC-CACUGgUUCGUGCGCU--------------AGCuGCC- -5'
25695 3' -54.6 NC_005337.1 + 34878 0.67 0.912084
Target:  5'- cGAcGUGAacucuaCGAGCGCGcCGGUCaGGCGGu -3'
miRNA:   3'- -CUcCACUg-----GUUCGUGC-GCUAG-CUGCC- -5'
25695 3' -54.6 NC_005337.1 + 74895 0.67 0.912084
Target:  5'- cGAGGacGCCGGGgGCGUGAUgGcGCGGc -3'
miRNA:   3'- -CUCCacUGGUUCgUGCGCUAgC-UGCC- -5'
25695 3' -54.6 NC_005337.1 + 96084 0.67 0.912084
Target:  5'- -cGGcGuacACgGGGCACGCGGgcgCGGCGGa -3'
miRNA:   3'- cuCCaC---UGgUUCGUGCGCUa--GCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 52099 0.67 0.912084
Target:  5'- -cGGcGGCCGcguGCAgGUGcgCGACGGg -3'
miRNA:   3'- cuCCaCUGGUu--CGUgCGCuaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 35733 0.67 0.912084
Target:  5'- -cGGcUGGC-AAGCACGCGGccgUCgGGCGGg -3'
miRNA:   3'- cuCC-ACUGgUUCGUGCGCU---AG-CUGCC- -5'
25695 3' -54.6 NC_005337.1 + 99569 0.67 0.912084
Target:  5'- aAGGUGACCAuGcCGCGCGAgUGcACGc -3'
miRNA:   3'- cUCCACUGGUuC-GUGCGCUaGC-UGCc -5'
25695 3' -54.6 NC_005337.1 + 11934 0.67 0.912084
Target:  5'- -cGGcacCCGGGCGCGCGccGUCGAgGGa -3'
miRNA:   3'- cuCCacuGGUUCGUGCGC--UAGCUgCC- -5'
25695 3' -54.6 NC_005337.1 + 73530 0.67 0.912084
Target:  5'- cGAGGcGGCacuCGAGUacauccGCGCGGucgUCGACGGg -3'
miRNA:   3'- -CUCCaCUG---GUUCG------UGCGCU---AGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 65668 0.67 0.905975
Target:  5'- cGAGGUGguGCCcAGCG-GCGAgacccUCGACGa -3'
miRNA:   3'- -CUCCAC--UGGuUCGUgCGCU-----AGCUGCc -5'
25695 3' -54.6 NC_005337.1 + 35680 0.67 0.905975
Target:  5'- gGAGGaGGCCGccuucgaccGGCugGCGAgCG-CGGg -3'
miRNA:   3'- -CUCCaCUGGU---------UCGugCGCUaGCuGCC- -5'
25695 3' -54.6 NC_005337.1 + 119782 0.67 0.905975
Target:  5'- --uGUGGCC--GCGCGUGGUCGguGCGGu -3'
miRNA:   3'- cucCACUGGuuCGUGCGCUAGC--UGCC- -5'
25695 3' -54.6 NC_005337.1 + 132798 0.67 0.905975
Target:  5'- cGAGGUGG---GGCGCGCGGaCGccaACGGa -3'
miRNA:   3'- -CUCCACUgguUCGUGCGCUaGC---UGCC- -5'
25695 3' -54.6 NC_005337.1 + 38501 0.67 0.905351
Target:  5'- nGAGcUGGCCGAcgacgucGC-CGCGAUCG-CGGg -3'
miRNA:   3'- -CUCcACUGGUU-------CGuGCGCUAGCuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.