miRNA display CGI


Results 21 - 40 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 5' -60.2 NC_005337.1 + 35967 0.66 0.689157
Target:  5'- aCGCCGCCGCg---GCaggGGGUAACa-- -3'
miRNA:   3'- -GCGGCGGCGugcaCGa--CCCGUUGacc -5'
25695 5' -60.2 NC_005337.1 + 124031 0.66 0.689157
Target:  5'- gCGCCccgcgaagGCCGCGCGccUGCc--GCGGCUGGa -3'
miRNA:   3'- -GCGG--------CGGCGUGC--ACGaccCGUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 97268 0.66 0.689157
Target:  5'- aGCCGgCGCuucgACGUGCUGGuGCucGACg-- -3'
miRNA:   3'- gCGGCgGCG----UGCACGACC-CG--UUGacc -5'
25695 5' -60.2 NC_005337.1 + 50402 0.66 0.689157
Target:  5'- gGCgCGCCGCGCGUcgGUgacGGaGCGGCgGGc -3'
miRNA:   3'- gCG-GCGGCGUGCA--CGa--CC-CGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 7040 0.66 0.689157
Target:  5'- gGCCGa-GCACGUcgggGC-GGGCGGCgGGg -3'
miRNA:   3'- gCGGCggCGUGCA----CGaCCCGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 69444 0.66 0.689157
Target:  5'- gCGCCaGCuCGCGCGcGCacaUGGGCAgguACcGGg -3'
miRNA:   3'- -GCGG-CG-GCGUGCaCG---ACCCGU---UGaCC- -5'
25695 5' -60.2 NC_005337.1 + 103237 0.66 0.689157
Target:  5'- gCGUCGCCGCAaGcGcCUGGGCuuCUucGGg -3'
miRNA:   3'- -GCGGCGGCGUgCaC-GACCCGuuGA--CC- -5'
25695 5' -60.2 NC_005337.1 + 97790 0.66 0.68817
Target:  5'- cCGCgGCCGCGgccaggcCGUGC--GGCAGgUGGu -3'
miRNA:   3'- -GCGgCGGCGU-------GCACGacCCGUUgACC- -5'
25695 5' -60.2 NC_005337.1 + 127783 0.66 0.683225
Target:  5'- aGCCGCCGaucgaccuccucgucCGCGcGCUGGucaccgccacCAACUGGg -3'
miRNA:   3'- gCGGCGGC---------------GUGCaCGACCc---------GUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 2795 0.66 0.679261
Target:  5'- cCGgUGCCGCAUGUGCacuaGGCGcuGCUGc -3'
miRNA:   3'- -GCgGCGGCGUGCACGac--CCGU--UGACc -5'
25695 5' -60.2 NC_005337.1 + 68138 0.66 0.679261
Target:  5'- gGUgGCCGCGCGcGCcccuagcGGGCGGC-GGa -3'
miRNA:   3'- gCGgCGGCGUGCaCGa------CCCGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 58735 0.66 0.679261
Target:  5'- gCGCCGgCGCGgGUGCaccGGaGCAGCa-- -3'
miRNA:   3'- -GCGGCgGCGUgCACGa--CC-CGUUGacc -5'
25695 5' -60.2 NC_005337.1 + 53704 0.66 0.679261
Target:  5'- aGCUGCCGCGCaUGCUGGaCA-C-GGa -3'
miRNA:   3'- gCGGCGGCGUGcACGACCcGUuGaCC- -5'
25695 5' -60.2 NC_005337.1 + 18406 0.66 0.679261
Target:  5'- uCGuCUGuuGCuCGagGgaGGGCGGCUGGg -3'
miRNA:   3'- -GC-GGCggCGuGCa-CgaCCCGUUGACC- -5'
25695 5' -60.2 NC_005337.1 + 20770 0.66 0.67827
Target:  5'- gGCCGCgGcCACGcGCUucgcggggacGGGCGugccggaGCUGGa -3'
miRNA:   3'- gCGGCGgC-GUGCaCGA----------CCCGU-------UGACC- -5'
25695 5' -60.2 NC_005337.1 + 97869 0.67 0.673305
Target:  5'- gGCCGCCGC-CGUGCucaaccgcauggucaUGGaGCAGaUGa -3'
miRNA:   3'- gCGGCGGCGuGCACG---------------ACC-CGUUgACc -5'
25695 5' -60.2 NC_005337.1 + 105099 0.67 0.669328
Target:  5'- gCGCCGCCGCGucucCGgaGCUGGaCGACgcGGc -3'
miRNA:   3'- -GCGGCGGCGU----GCa-CGACCcGUUGa-CC- -5'
25695 5' -60.2 NC_005337.1 + 121834 0.67 0.669328
Target:  5'- aCGCCgGCCG-ACGUGCucgugaagucggUGGGCGccaACgUGGa -3'
miRNA:   3'- -GCGG-CGGCgUGCACG------------ACCCGU---UG-ACC- -5'
25695 5' -60.2 NC_005337.1 + 128082 0.67 0.669328
Target:  5'- aGUCGCCGCGCccgagacccggaGUGCUaaGCgAACUGGu -3'
miRNA:   3'- gCGGCGGCGUG------------CACGAccCG-UUGACC- -5'
25695 5' -60.2 NC_005337.1 + 70778 0.67 0.659367
Target:  5'- gGCCGCgGCcgacuCGgagGCcaUGcGGCGGCUGGu -3'
miRNA:   3'- gCGGCGgCGu----GCa--CG--AC-CCGUUGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.