miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 84029 0.66 0.750647
Target:  5'- gCG-GCgggaCAcaCCGGCGGAGgcGCGCa -3'
miRNA:   3'- gGCaCGg---GUucGGCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 77145 0.66 0.740245
Target:  5'- aCGgcGUCCAGGCUGGCGGcgaccacgGGGUacugccgGCGCc -3'
miRNA:   3'- gGCa-CGGGUUCGGCCGCC--------UCUA-------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 91715 0.66 0.72203
Target:  5'- aCC-UGCa--GGCCGGUGGGGuaGCGCa -3'
miRNA:   3'- -GGcACGgguUCGGCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 43831 0.66 0.741195
Target:  5'- aCGcUGCagCGGGCCGGCGGcGcgGUGg -3'
miRNA:   3'- gGC-ACGg-GUUCGGCCGCCuCuaCGCg -5'
25699 3' -59.7 NC_005337.1 + 122188 0.66 0.72203
Target:  5'- gCGUGCCCGcGCCucaucgccgcgGGCGcGGAcgugucgGCGCg -3'
miRNA:   3'- gGCACGGGUuCGG-----------CCGCcUCUa------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 16620 0.66 0.750647
Target:  5'- gCGUGCCCGacuucuucgAGCgcuccaccaCGGCGGuGAcGCGg -3'
miRNA:   3'- gGCACGGGU---------UCG---------GCCGCCuCUaCGCg -5'
25699 3' -59.7 NC_005337.1 + 5707 0.66 0.730695
Target:  5'- -aGUGCuugaccgCCAGGCCGgaGCGGGGAgccaCGCg -3'
miRNA:   3'- ggCACG-------GGUUCGGC--CGCCUCUac--GCG- -5'
25699 3' -59.7 NC_005337.1 + 20762 0.66 0.719128
Target:  5'- --aUGCCCAgGGCCGcggccacgcgcuucGCGGGGAcggGCGUg -3'
miRNA:   3'- ggcACGGGU-UCGGC--------------CGCCUCUa--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 20156 0.66 0.750647
Target:  5'- aCGcUGCCgCAGGCCgcGGCGGAGGccacgaagcucuUGaCGUu -3'
miRNA:   3'- gGC-ACGG-GUUCGG--CCGCCUCU------------AC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 89871 0.66 0.72203
Target:  5'- uCCGaGCgCGcGCUGGCgauGGAGA-GCGCg -3'
miRNA:   3'- -GGCaCGgGUuCGGCCG---CCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 4653 0.66 0.751586
Target:  5'- cCCGgcgGCCaCGAGCCGcCGGAcGAgcuccacggucgcucGCGCg -3'
miRNA:   3'- -GGCa--CGG-GUUCGGCcGCCU-CUa--------------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 1138 0.66 0.722996
Target:  5'- gCGcGCgaCCAGcuccgcggggagcgcGCCGGCGGAGcggcccgcuaggcgGUGCGCg -3'
miRNA:   3'- gGCaCG--GGUU---------------CGGCCGCCUC--------------UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 101246 0.66 0.750647
Target:  5'- gCGUGCUCGcGCUGGaCGGcGcgGaCGCg -3'
miRNA:   3'- gGCACGGGUuCGGCC-GCCuCuaC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 99401 0.66 0.750647
Target:  5'- gCCGgugcUGCgCAccGCgGGCGGcGGGUGCGUg -3'
miRNA:   3'- -GGC----ACGgGUu-CGgCCGCC-UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 13946 0.67 0.712333
Target:  5'- gUCGUGCuCCAugGGCgagGGCGGGGAaggagggggaUGCGg -3'
miRNA:   3'- -GGCACG-GGU--UCGg--CCGCCUCU----------ACGCg -5'
25699 3' -59.7 NC_005337.1 + 73441 0.67 0.672978
Target:  5'- aUCGUGCgCCAGuucuucGCgCGGCGGuGccGCGUg -3'
miRNA:   3'- -GGCACG-GGUU------CG-GCCGCCuCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 100201 0.67 0.672978
Target:  5'- uCCGcgGCCUGcucuacgacGGCCGGCGccgcGUGCGCg -3'
miRNA:   3'- -GGCa-CGGGU---------UCGGCCGCcuc-UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 96092 0.67 0.702571
Target:  5'- aCGggGCaCgCGGGCgCGGCGGAGGacaUGCGg -3'
miRNA:   3'- gGCa-CG-G-GUUCG-GCCGCCUCU---ACGCg -5'
25699 3' -59.7 NC_005337.1 + 1269 0.67 0.706483
Target:  5'- gCCGcaggaugGCCCGcggaggcgGGUCGGCGGgcagguuguccauccGGcgGCGCa -3'
miRNA:   3'- -GGCa------CGGGU--------UCGGCCGCC---------------UCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 63512 0.67 0.712333
Target:  5'- uCCGUGCUCAccgacgugcaGGCCucgGGCGu-GcgGCGCu -3'
miRNA:   3'- -GGCACGGGU----------UCGG---CCGCcuCuaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.