miRNA display CGI


Results 61 - 80 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 33683 0.67 0.682885
Target:  5'- ---cGCCgAGGCCGGCGG----GCGCc -3'
miRNA:   3'- ggcaCGGgUUCGGCCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 38303 0.67 0.672978
Target:  5'- uCCGUGUCCAAGgUGGaGGuGAUcgacacgccgGCGCc -3'
miRNA:   3'- -GGCACGGGUUCgGCCgCCuCUA----------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 58077 0.67 0.672978
Target:  5'- cUCGUGgaCAAGCuCGGCGGc-GUGUGCu -3'
miRNA:   3'- -GGCACggGUUCG-GCCGCCucUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 98124 0.67 0.66304
Target:  5'- aCCGUGaCCAGGCaccgCGGCGGcGGGUcCGUg -3'
miRNA:   3'- -GGCACgGGUUCG----GCCGCC-UCUAcGCG- -5'
25699 3' -59.7 NC_005337.1 + 76811 0.67 0.66304
Target:  5'- -gGUGCgCGcGCUugaugcgcaGGCGGuGGAUGCGCa -3'
miRNA:   3'- ggCACGgGUuCGG---------CCGCC-UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 2272 0.67 0.67
Target:  5'- cCCGUGUCCGcccgcacugggucaGGCugCGGCGGGGucgggaGCGUc -3'
miRNA:   3'- -GGCACGGGU--------------UCG--GCCGCCUCua----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 35012 0.67 0.692752
Target:  5'- gCCGUGCCgAAccccgcgucGCCGuccGCGGcGA-GCGCg -3'
miRNA:   3'- -GGCACGGgUU---------CGGC---CGCCuCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 97517 0.67 0.682885
Target:  5'- gCGUGCacaCCGuGCCcGUGGAGAUGCcggGCu -3'
miRNA:   3'- gGCACG---GGUuCGGcCGCCUCUACG---CG- -5'
25699 3' -59.7 NC_005337.1 + 89921 0.67 0.681896
Target:  5'- gCGUcGCCCcacuccucacagaGGGCCGcGCGGAuaaagGCGCg -3'
miRNA:   3'- gGCA-CGGG-------------UUCGGC-CGCCUcua--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 60101 0.67 0.667018
Target:  5'- cCCG-GCCCGAGCgcgccucccgcagcaCGGCGGuGAccuCGCu -3'
miRNA:   3'- -GGCaCGGGUUCG---------------GCCGCCuCUac-GCG- -5'
25699 3' -59.7 NC_005337.1 + 115134 0.67 0.692752
Target:  5'- gCGUGCacaCGAcGCgcgUGGCGGAGGccUGCGUc -3'
miRNA:   3'- gGCACGg--GUU-CG---GCCGCCUCU--ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 87934 0.67 0.712333
Target:  5'- uUCGUGCac--GCCGGCGGcagcccGGAccuccUGCGCc -3'
miRNA:   3'- -GGCACGgguuCGGCCGCC------UCU-----ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 31893 0.67 0.702571
Target:  5'- uUCGcGCUCuccaccAGCgCGGUGGccAGGUGCGCg -3'
miRNA:   3'- -GGCaCGGGu-----UCG-GCCGCC--UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 77866 0.67 0.699631
Target:  5'- -gGUGCCCAgcagguacaucAGCuCGGUGGGGuucaccuuguaccccGCGCg -3'
miRNA:   3'- ggCACGGGU-----------UCG-GCCGCCUCua-------------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 97827 0.67 0.681896
Target:  5'- aCCGUGCguCCGcccgcgcagcugcAGCCGG-GuGAGgcGCGCg -3'
miRNA:   3'- -GGCACG--GGU-------------UCGGCCgC-CUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 37952 0.67 0.702571
Target:  5'- gCCGUGCCUc-GUC-GUGGGGuacUGCGCg -3'
miRNA:   3'- -GGCACGGGuuCGGcCGCCUCu--ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 14107 0.67 0.702571
Target:  5'- uUGuUGUCCAugguGCCGGCGGuG-UGUGUg -3'
miRNA:   3'- gGC-ACGGGUu---CGGCCGCCuCuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 47664 0.67 0.712333
Target:  5'- cCCGgcGCCCGgcauGCUGGCGGGcGUcCGCg -3'
miRNA:   3'- -GGCa-CGGGUu---CGGCCGCCUcUAcGCG- -5'
25699 3' -59.7 NC_005337.1 + 80032 0.68 0.653078
Target:  5'- cCCG-GCCCGGacgcGCCGGacgaGGAGAUcuaCGCc -3'
miRNA:   3'- -GGCaCGGGUU----CGGCCg---CCUCUAc--GCG- -5'
25699 3' -59.7 NC_005337.1 + 1979 0.68 0.653078
Target:  5'- gCCGUGCacgCCGGGUCGGCGucAGcUGCGg -3'
miRNA:   3'- -GGCACG---GGUUCGGCCGCc-UCuACGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.