Results 81 - 100 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25699 | 3' | -59.7 | NC_005337.1 | + | 32762 | 0.68 | 0.623126 |
Target: 5'- aCG-GCCUccAGCCGcGCGGAGcgcucGCGCa -3' miRNA: 3'- gGCaCGGGu-UCGGC-CGCCUCua---CGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 58999 | 0.68 | 0.603178 |
Target: 5'- -gGUGCUCAAGCgGaGCucgcuGGAGuggGUGCGCg -3' miRNA: 3'- ggCACGGGUUCGgC-CG-----CCUC---UACGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 835 | 0.68 | 0.622128 |
Target: 5'- gCGgGCCCGGGCUcgacgaaGGCGGcGGgcaGCGCg -3' miRNA: 3'- gGCaCGGGUUCGG-------CCGCCuCUa--CGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 9514 | 0.68 | 0.623126 |
Target: 5'- gCCGU-CaCCAugcGGCCGGgGGAGGcugGUGCu -3' miRNA: 3'- -GGCAcG-GGU---UCGGCCgCCUCUa--CGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 115843 | 0.68 | 0.633113 |
Target: 5'- cCCGUGCUCAa---GGCGGAGcgGCu- -3' miRNA: 3'- -GGCACGGGUucggCCGCCUCuaCGcg -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 56943 | 0.68 | 0.603178 |
Target: 5'- gCGUGgCCuc-CCGGCgGGAGAUGCu- -3' miRNA: 3'- gGCACgGGuucGGCCG-CCUCUACGcg -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 10420 | 0.68 | 0.602183 |
Target: 5'- gCUGcGCCCAGGaggacgcCUGcGCGGcGGUGCGCg -3' miRNA: 3'- -GGCaCGGGUUC-------GGC-CGCCuCUACGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 94842 | 0.68 | 0.653078 |
Target: 5'- aCCGagcgcgGCCCGAGCgGGCGccc--GCGCg -3' miRNA: 3'- -GGCa-----CGGGUUCGgCCGCcucuaCGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 46354 | 0.68 | 0.643099 |
Target: 5'- gCGUGCaCGAagcGCCGGCGcAGgcGCGCc -3' miRNA: 3'- gGCACGgGUU---CGGCCGCcUCuaCGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 86629 | 0.68 | 0.643099 |
Target: 5'- -aGUGCaCCAcguAGuacCCGGCGGuGgcGCGCa -3' miRNA: 3'- ggCACG-GGU---UC---GGCCGCCuCuaCGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 967 | 0.68 | 0.643099 |
Target: 5'- gCGggGCUgGAG-CGGCGGGGcugGCGCg -3' miRNA: 3'- gGCa-CGGgUUCgGCCGCCUCua-CGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 7041 | 0.68 | 0.633113 |
Target: 5'- gCCGagcacGUCgGGGCgggCGGCGGGGuUGCGCg -3' miRNA: 3'- -GGCa----CGGgUUCG---GCCGCCUCuACGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 29193 | 0.68 | 0.623126 |
Target: 5'- gCGgcGCCCGuGCCGaaGGAGGcgcUGCGCa -3' miRNA: 3'- gGCa-CGGGUuCGGCcgCCUCU---ACGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 121987 | 0.68 | 0.623126 |
Target: 5'- aUCGUGCgCGAGCUccuGcGCGcGGGGUGCGa -3' miRNA: 3'- -GGCACGgGUUCGG---C-CGC-CUCUACGCg -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 110325 | 0.68 | 0.623126 |
Target: 5'- gCCGUucgGCCC-GGCCgGGCGGcgucGCGCg -3' miRNA: 3'- -GGCA---CGGGuUCGG-CCGCCucuaCGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 34155 | 0.68 | 0.623126 |
Target: 5'- -gGUGCaaCAGGUCcaCGGGGAUGCGCa -3' miRNA: 3'- ggCACGg-GUUCGGccGCCUCUACGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 835 | 0.68 | 0.622128 |
Target: 5'- gCGgGCCCGGGCUcgacgaaGGCGGcGGgcaGCGCg -3' miRNA: 3'- gGCaCGGGUUCGG-------CCGCCuCUa--CGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 40009 | 0.68 | 0.613145 |
Target: 5'- aCGgagGCCauccGCgCGGUGGAGAUGCuaGCg -3' miRNA: 3'- gGCa--CGGguu-CG-GCCGCCUCUACG--CG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 123288 | 0.68 | 0.603178 |
Target: 5'- aCCGUGUCCGuGCCGcacgcgcuGCGcGGAUcGCGCc -3' miRNA: 3'- -GGCACGGGUuCGGC--------CGCcUCUA-CGCG- -5' |
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25699 | 3' | -59.7 | NC_005337.1 | + | 60253 | 0.68 | 0.603178 |
Target: 5'- gCCGgaGUCgGAGCCGGaguCGGGGcagGCGCg -3' miRNA: 3'- -GGCa-CGGgUUCGGCC---GCCUCua-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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