miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 97795 0.69 0.573426
Target:  5'- gCCGcGgCCAGGCCGuGCGGcAGGUG-GUg -3'
miRNA:   3'- -GGCaCgGGUUCGGC-CGCC-UCUACgCG- -5'
25699 3' -59.7 NC_005337.1 + 87221 0.69 0.56358
Target:  5'- aCGUGCgaCUucGCCaGGaugauGGAGAUGCGCu -3'
miRNA:   3'- gGCACG--GGuuCGG-CCg----CCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 125285 0.69 0.593232
Target:  5'- ---aGCCCcGGCaCGGaGGAGGUGCGg -3'
miRNA:   3'- ggcaCGGGuUCG-GCCgCCUCUACGCg -5'
25699 3' -59.7 NC_005337.1 + 74508 0.69 0.587277
Target:  5'- gCCG-GCuguccuuuuuguccaCCGAGCUcGCGGAGAcGCGCu -3'
miRNA:   3'- -GGCaCG---------------GGUUCGGcCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 124796 0.69 0.583312
Target:  5'- gCGcGCagaUggGCCGGCGGuGGAcGCGCc -3'
miRNA:   3'- gGCaCGg--GuuCGGCCGCC-UCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 38280 0.69 0.582322
Target:  5'- gCGUuCCCGcucgucaAGCacCGGUGGAGggGCGCg -3'
miRNA:   3'- gGCAcGGGU-------UCG--GCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 4084 0.69 0.577376
Target:  5'- uCCGcGCCCAucuucAGCagcguccucaccgcgCGcGCGGAGAcGCGCg -3'
miRNA:   3'- -GGCaCGGGU-----UCG---------------GC-CGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 78299 0.69 0.573426
Target:  5'- gCCGUaCuCCAGGCUGG-GGAGGUGgccCGCg -3'
miRNA:   3'- -GGCAcG-GGUUCGGCCgCCUCUAC---GCG- -5'
25699 3' -59.7 NC_005337.1 + 102408 0.69 0.570468
Target:  5'- aCCGUGCCCA--CgGGCGGGGAcauccccgaguacgUgaacGCGCu -3'
miRNA:   3'- -GGCACGGGUucGgCCGCCUCU--------------A----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 80525 0.69 0.56358
Target:  5'- gCCGagGCCCGGGgC-GCGGAGAUGUcCa -3'
miRNA:   3'- -GGCa-CGGGUUCgGcCGCCUCUACGcG- -5'
25699 3' -59.7 NC_005337.1 + 53773 0.69 0.573426
Target:  5'- gCGUGCCCGcccccGGCC-GCGGg---GCGCa -3'
miRNA:   3'- gGCACGGGU-----UCGGcCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 52929 0.69 0.56358
Target:  5'- aCGUGCCCu-G-CGGCaaGGAGAUGCu- -3'
miRNA:   3'- gGCACGGGuuCgGCCG--CCUCUACGcg -5'
25699 3' -59.7 NC_005337.1 + 10962 0.69 0.553779
Target:  5'- ---aGCCaCAcuGGCCGGCGGAuccGCGCa -3'
miRNA:   3'- ggcaCGG-GU--UCGGCCGCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 35192 0.69 0.56358
Target:  5'- uCCGccGUCCAcaccuGCCGGaacaCGGAGAaGCGCa -3'
miRNA:   3'- -GGCa-CGGGUu----CGGCC----GCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 29021 0.69 0.56358
Target:  5'- aCGgcgGcCCCAAGCCguGGUGGuGGggGCGCc -3'
miRNA:   3'- gGCa--C-GGGUUCGG--CCGCC-UCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 88257 0.69 0.56358
Target:  5'- gCGUGCCgGcgcGCCGGCGGGcGccGCGg -3'
miRNA:   3'- gGCACGGgUu--CGGCCGCCU-CuaCGCg -5'
25699 3' -59.7 NC_005337.1 + 118720 0.69 0.56358
Target:  5'- gCCGU--UCAAGCCGGUGGAcggcauggagacGAUGCuGCg -3'
miRNA:   3'- -GGCAcgGGUUCGGCCGCCU------------CUACG-CG- -5'
25699 3' -59.7 NC_005337.1 + 106575 0.69 0.56358
Target:  5'- aUCGUGC---AGCCGGUGGcguGGAcGCGCg -3'
miRNA:   3'- -GGCACGgguUCGGCCGCC---UCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 67551 0.69 0.553779
Target:  5'- gCGUGUCCGGGUugaGGCGGAag-GCGUc -3'
miRNA:   3'- gGCACGGGUUCGg--CCGCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 115609 0.69 0.569483
Target:  5'- aCCG-GCCCucggauccgcccGCCGGCGGcg--GCGCg -3'
miRNA:   3'- -GGCaCGGGuu----------CGGCCGCCucuaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.