miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 128086 0.71 0.465744
Target:  5'- gCCGcGCCCGAGacCCGGagugcuaagcgaacUGGuGGUGCGCg -3'
miRNA:   3'- -GGCaCGGGUUC--GGCC--------------GCCuCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 93466 0.71 0.468476
Target:  5'- ---cGCCC--GCCGGCGGGaacgugguGGUGCGCc -3'
miRNA:   3'- ggcaCGGGuuCGGCCGCCU--------CUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 45326 0.71 0.468476
Target:  5'- -gGUGCCCAccaAGaCCaGGCGGAucauGggGCGCg -3'
miRNA:   3'- ggCACGGGU---UC-GG-CCGCCU----CuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 132484 0.71 0.472131
Target:  5'- cCCGUGCggCGgcaggagggacuggcGGCCGGCGG-GAUGcCGCc -3'
miRNA:   3'- -GGCACGg-GU---------------UCGGCCGCCuCUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 57245 0.71 0.477641
Target:  5'- gCCGUGCaCCGGcGCUGGUucgggcacGGGGccGCGCg -3'
miRNA:   3'- -GGCACG-GGUU-CGGCCG--------CCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 83925 0.7 0.486894
Target:  5'- gCUG-GCCCAGGCuCGGCcGGGcgGCGg -3'
miRNA:   3'- -GGCaCGGGUUCG-GCCGcCUCuaCGCg -5'
25699 3' -59.7 NC_005337.1 + 100535 0.7 0.496232
Target:  5'- gCUcUGCgCCAugcGCCGGCGGuucAUGCGCa -3'
miRNA:   3'- -GGcACG-GGUu--CGGCCGCCuc-UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 80101 0.7 0.496232
Target:  5'- gCGUGCCUgaagccGAGCCaGGCGGucguGGAcaccggGCGCg -3'
miRNA:   3'- gGCACGGG------UUCGG-CCGCC----UCUa-----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 67896 0.7 0.515141
Target:  5'- gCGUGCUCGaagcgguggAGCCGGaCGGGaGUGcCGCg -3'
miRNA:   3'- gGCACGGGU---------UCGGCC-GCCUcUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 68290 0.7 0.515141
Target:  5'- gCG-GCC--GGCCGGCGGcguGGAcGCGCg -3'
miRNA:   3'- gGCaCGGguUCGGCCGCC---UCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 64147 0.7 0.523746
Target:  5'- aCC-UGUCCcugacggAGGgCGGCgaGGAGAUGCGCg -3'
miRNA:   3'- -GGcACGGG-------UUCgGCCG--CCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 11363 0.7 0.524706
Target:  5'- aUCGcGCCCucGAGCgcgcucgccauCGGCGGGcuGAUGCGCc -3'
miRNA:   3'- -GGCaCGGG--UUCG-----------GCCGCCU--CUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 50356 0.7 0.524706
Target:  5'- ----cCCCAcGCCGGCGGAGAcGgGCc -3'
miRNA:   3'- ggcacGGGUuCGGCCGCCUCUaCgCG- -5'
25699 3' -59.7 NC_005337.1 + 112334 0.7 0.534337
Target:  5'- gCCGaUGaCCUccgcGAGCuCGGCGGAGc-GCGCg -3'
miRNA:   3'- -GGC-AC-GGG----UUCG-GCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 132310 0.7 0.534337
Target:  5'- gCGUGCac--GgCGGCGGAGGggGCGCu -3'
miRNA:   3'- gGCACGgguuCgGCCGCCUCUa-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 22607 0.69 0.54403
Target:  5'- gCCGUGgaCCCGgacuucuucgAGCCGGCGcGGAUcCGCg -3'
miRNA:   3'- -GGCAC--GGGU----------UCGGCCGCcUCUAcGCG- -5'
25699 3' -59.7 NC_005337.1 + 102377 0.69 0.54403
Target:  5'- cCUG-GCCaccgcGCUGGUGGAGA-GCGCg -3'
miRNA:   3'- -GGCaCGGguu--CGGCCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 67551 0.69 0.553779
Target:  5'- gCGUGUCCGGGUugaGGCGGAag-GCGUc -3'
miRNA:   3'- gGCACGGGUUCGg--CCGCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 10962 0.69 0.553779
Target:  5'- ---aGCCaCAcuGGCCGGCGGAuccGCGCa -3'
miRNA:   3'- ggcaCGG-GU--UCGGCCGCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 56238 0.69 0.553779
Target:  5'- aUCGUGCCCAugucGCCGGCcgacGAGGccGaCGCg -3'
miRNA:   3'- -GGCACGGGUu---CGGCCGc---CUCUa-C-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.