miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 105045 0.69 0.583312
Target:  5'- aCCGgcaggcgacGCCC-GGCCGcGCGGcGcUGCGCa -3'
miRNA:   3'- -GGCa--------CGGGuUCGGC-CGCCuCuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 108709 0.69 0.583312
Target:  5'- uCCGUGUUCcuggaggugGGGUCGGCGGAcaucggauucucGcgGCGCg -3'
miRNA:   3'- -GGCACGGG---------UUCGGCCGCCU------------CuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 74508 0.69 0.587277
Target:  5'- gCCG-GCuguccuuuuuguccaCCGAGCUcGCGGAGAcGCGCu -3'
miRNA:   3'- -GGCaCG---------------GGUUCGGcCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 7785 0.69 0.593232
Target:  5'- uUGcGCUCAAuGCCGGCGGGGGaauUGCa- -3'
miRNA:   3'- gGCaCGGGUU-CGGCCGCCUCU---ACGcg -5'
25699 3' -59.7 NC_005337.1 + 125285 0.69 0.593232
Target:  5'- ---aGCCCcGGCaCGGaGGAGGUGCGg -3'
miRNA:   3'- ggcaCGGGuUCG-GCCgCCUCUACGCg -5'
25699 3' -59.7 NC_005337.1 + 10420 0.68 0.602183
Target:  5'- gCUGcGCCCAGGaggacgcCUGcGCGGcGGUGCGCg -3'
miRNA:   3'- -GGCaCGGGUUC-------GGC-CGCCuCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 60253 0.68 0.603178
Target:  5'- gCCGgaGUCgGAGCCGGaguCGGGGcagGCGCg -3'
miRNA:   3'- -GGCa-CGGgUUCGGCC---GCCUCua-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 123288 0.68 0.603178
Target:  5'- aCCGUGUCCGuGCCGcacgcgcuGCGcGGAUcGCGCc -3'
miRNA:   3'- -GGCACGGGUuCGGC--------CGCcUCUA-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 91850 0.68 0.603178
Target:  5'- cCCGgaagcucacGCCgAAGCCGGCGcacagcGAGGccGCGCg -3'
miRNA:   3'- -GGCa--------CGGgUUCGGCCGC------CUCUa-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 58999 0.68 0.603178
Target:  5'- -gGUGCUCAAGCgGaGCucgcuGGAGuggGUGCGCg -3'
miRNA:   3'- ggCACGGGUUCGgC-CG-----CCUC---UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 56943 0.68 0.603178
Target:  5'- gCGUGgCCuc-CCGGCgGGAGAUGCu- -3'
miRNA:   3'- gGCACgGGuucGGCCG-CCUCUACGcg -5'
25699 3' -59.7 NC_005337.1 + 40009 0.68 0.613145
Target:  5'- aCGgagGCCauccGCgCGGUGGAGAUGCuaGCg -3'
miRNA:   3'- gGCa--CGGguu-CG-GCCGCCUCUACG--CG- -5'
25699 3' -59.7 NC_005337.1 + 111071 0.68 0.613145
Target:  5'- aCUGcuUGUCC--GCgGGCGuGAGGUGCGCc -3'
miRNA:   3'- -GGC--ACGGGuuCGgCCGC-CUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 128177 0.68 0.613145
Target:  5'- uCCGUGCgCAcuGCCGcCGGAGAU-CGUg -3'
miRNA:   3'- -GGCACGgGUu-CGGCcGCCUCUAcGCG- -5'
25699 3' -59.7 NC_005337.1 + 835 0.68 0.622128
Target:  5'- gCGgGCCCGGGCUcgacgaaGGCGGcGGgcaGCGCg -3'
miRNA:   3'- gGCaCGGGUUCGG-------CCGCCuCUa--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 835 0.68 0.622128
Target:  5'- gCGgGCCCGGGCUcgacgaaGGCGGcGGgcaGCGCg -3'
miRNA:   3'- gGCaCGGGUUCGG-------CCGCCuCUa--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 34155 0.68 0.623126
Target:  5'- -gGUGCaaCAGGUCcaCGGGGAUGCGCa -3'
miRNA:   3'- ggCACGg-GUUCGGccGCCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 110325 0.68 0.623126
Target:  5'- gCCGUucgGCCC-GGCCgGGCGGcgucGCGCg -3'
miRNA:   3'- -GGCA---CGGGuUCGG-CCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 121987 0.68 0.623126
Target:  5'- aUCGUGCgCGAGCUccuGcGCGcGGGGUGCGa -3'
miRNA:   3'- -GGCACGgGUUCGG---C-CGC-CUCUACGCg -5'
25699 3' -59.7 NC_005337.1 + 29193 0.68 0.623126
Target:  5'- gCGgcGCCCGuGCCGaaGGAGGcgcUGCGCa -3'
miRNA:   3'- gGCa-CGGGUuCGGCcgCCUCU---ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.