miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 10420 0.68 0.602183
Target:  5'- gCUGcGCCCAGGaggacgcCUGcGCGGcGGUGCGCg -3'
miRNA:   3'- -GGCaCGGGUUC-------GGC-CGCCuCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 10962 0.69 0.553779
Target:  5'- ---aGCCaCAcuGGCCGGCGGAuccGCGCa -3'
miRNA:   3'- ggcaCGG-GU--UCGGCCGCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 11363 0.7 0.524706
Target:  5'- aUCGcGCCCucGAGCgcgcucgccauCGGCGGGcuGAUGCGCc -3'
miRNA:   3'- -GGCaCGGG--UUCG-----------GCCGCCU--CUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 12180 0.66 0.731654
Target:  5'- gCCGUGCgcgaCGAGCUGGUcGAGcaccgaGCGCu -3'
miRNA:   3'- -GGCACGg---GUUCGGCCGcCUCua----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 12921 0.72 0.38229
Target:  5'- cCCGUGCgCCGAG-UGGCuGGuGcgGCGCg -3'
miRNA:   3'- -GGCACG-GGUUCgGCCG-CCuCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 13895 0.71 0.450421
Target:  5'- aCGUGCCgcaCGAGCCGGC--AGgcGCGCc -3'
miRNA:   3'- gGCACGG---GUUCGGCCGccUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 13946 0.67 0.712333
Target:  5'- gUCGUGCuCCAugGGCgagGGCGGGGAaggagggggaUGCGg -3'
miRNA:   3'- -GGCACG-GGU--UCGg--CCGCCUCU----------ACGCg -5'
25699 3' -59.7 NC_005337.1 + 14107 0.67 0.702571
Target:  5'- uUGuUGUCCAugguGCCGGCGGuG-UGUGUg -3'
miRNA:   3'- gGC-ACGGGUu---CGGCCGCCuCuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 16620 0.66 0.750647
Target:  5'- gCGUGCCCGacuucuucgAGCgcuccaccaCGGCGGuGAcGCGg -3'
miRNA:   3'- gGCACGGGU---------UCG---------GCCGCCuCUaCGCg -5'
25699 3' -59.7 NC_005337.1 + 18434 0.66 0.759068
Target:  5'- gCCGcuccGCCUugagcacgggcggGGGaCUGGCGGGGAguccGCGCg -3'
miRNA:   3'- -GGCa---CGGG-------------UUC-GGCCGCCUCUa---CGCG- -5'
25699 3' -59.7 NC_005337.1 + 18648 0.67 0.672978
Target:  5'- gUGUGUgaucgCCAGGUCGGCGGuGGcguacccGCGCa -3'
miRNA:   3'- gGCACG-----GGUUCGGCCGCCuCUa------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 20156 0.66 0.750647
Target:  5'- aCGcUGCCgCAGGCCgcGGCGGAGGccacgaagcucuUGaCGUu -3'
miRNA:   3'- gGC-ACGG-GUUCGG--CCGCCUCU------------AC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 20762 0.66 0.719128
Target:  5'- --aUGCCCAgGGCCGcggccacgcgcuucGCGGGGAcggGCGUg -3'
miRNA:   3'- ggcACGGGU-UCGGC--------------CGCCUCUa--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 22607 0.69 0.54403
Target:  5'- gCCGUGgaCCCGgacuucuucgAGCCGGCGcGGAUcCGCg -3'
miRNA:   3'- -GGCAC--GGGU----------UCGGCCGCcUCUAcGCG- -5'
25699 3' -59.7 NC_005337.1 + 23915 0.66 0.741195
Target:  5'- gCCGcgcGCCCGcgcGCCcGCGGcAGgcGCGCg -3'
miRNA:   3'- -GGCa--CGGGUu--CGGcCGCC-UCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 24520 1.13 0.000639
Target:  5'- cCCGUGCCCAAGCCGGCGGAGAUGCGCg -3'
miRNA:   3'- -GGCACGGGUUCGGCCGCCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 24835 0.68 0.642101
Target:  5'- gCCGUGCUCGAG-CGGCGcgugcucgaggacGuGGUcGCGCa -3'
miRNA:   3'- -GGCACGGGUUCgGCCGC-------------CuCUA-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 28731 0.67 0.692752
Target:  5'- uCC-UGCCCcAGCgGGUGGAc--GCGCu -3'
miRNA:   3'- -GGcACGGGuUCGgCCGCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 29021 0.69 0.56358
Target:  5'- aCGgcgGcCCCAAGCCguGGUGGuGGggGCGCc -3'
miRNA:   3'- gGCa--C-GGGUUCGG--CCGCC-UCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 29193 0.68 0.623126
Target:  5'- gCGgcGCCCGuGCCGaaGGAGGcgcUGCGCa -3'
miRNA:   3'- gGCa-CGGGUuCGGCcgCCUCU---ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.