miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 45045 0.67 0.691767
Target:  5'- aCGaUGCuCCGcaagcugggcgccGGCCGGcCGGAGAUccGUGCc -3'
miRNA:   3'- gGC-ACG-GGU-------------UCGGCC-GCCUCUA--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 45326 0.71 0.468476
Target:  5'- -gGUGCCCAccaAGaCCaGGCGGAucauGggGCGCg -3'
miRNA:   3'- ggCACGGGU---UC-GG-CCGCCU----CuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 45521 0.67 0.672978
Target:  5'- uCCGgGUCCucggcgucggGAGCCGGUgcuGGAGucgGCGCc -3'
miRNA:   3'- -GGCaCGGG----------UUCGGCCG---CCUCua-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 46354 0.68 0.643099
Target:  5'- gCGUGCaCGAagcGCCGGCGcAGgcGCGCc -3'
miRNA:   3'- gGCACGgGUU---CGGCCGCcUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 47664 0.67 0.712333
Target:  5'- cCCGgcGCCCGgcauGCUGGCGGGcGUcCGCg -3'
miRNA:   3'- -GGCa-CGGGUu---CGGCCGCCUcUAcGCG- -5'
25699 3' -59.7 NC_005337.1 + 47861 0.67 0.682885
Target:  5'- -aGUGCacguCGGGCgCGGCGGAcgcaGAcuucUGCGCg -3'
miRNA:   3'- ggCACGg---GUUCG-GCCGCCU----CU----ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 47921 0.72 0.398674
Target:  5'- aCCGUGcCCCGGGUCGuuGCGGAGGaggccggccUGaCGCu -3'
miRNA:   3'- -GGCAC-GGGUUCGGC--CGCCUCU---------AC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 48388 0.67 0.712333
Target:  5'- gCCGcGCCUucGAGCCGcGCacGGAGAcgcucgGCGUa -3'
miRNA:   3'- -GGCaCGGG--UUCGGC-CG--CCUCUa-----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 48793 0.72 0.424076
Target:  5'- aCGUGCUCAAGCUGGUGGccGUGUuCg -3'
miRNA:   3'- gGCACGGGUUCGGCCGCCucUACGcG- -5'
25699 3' -59.7 NC_005337.1 + 50356 0.7 0.524706
Target:  5'- ----cCCCAcGCCGGCGGAGAcGgGCc -3'
miRNA:   3'- ggcacGGGUuCGGCCGCCUCUaCgCG- -5'
25699 3' -59.7 NC_005337.1 + 50958 0.69 0.583312
Target:  5'- gCCGcGCCCcuAGCCggucgaccgGGCGGGGcgccGCGCg -3'
miRNA:   3'- -GGCaCGGGu-UCGG---------CCGCCUCua--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 52087 0.75 0.268016
Target:  5'- gCCGUGCgCGc-CCGGCGGccgcgugcAGGUGCGCg -3'
miRNA:   3'- -GGCACGgGUucGGCCGCC--------UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 52475 0.66 0.741195
Target:  5'- gCCGcggcGCCCGcgagAGCCGGCuc--AUGCGCg -3'
miRNA:   3'- -GGCa---CGGGU----UCGGCCGccucUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 52929 0.69 0.56358
Target:  5'- aCGUGCCCu-G-CGGCaaGGAGAUGCu- -3'
miRNA:   3'- gGCACGGGuuCgGCCG--CCUCUACGcg -5'
25699 3' -59.7 NC_005337.1 + 52956 0.67 0.682885
Target:  5'- ---aGCCCuucgcGCCGccguucuccGCGGAGAUGCGg -3'
miRNA:   3'- ggcaCGGGuu---CGGC---------CGCCUCUACGCg -5'
25699 3' -59.7 NC_005337.1 + 53773 0.69 0.573426
Target:  5'- gCGUGCCCGcccccGGCC-GCGGg---GCGCa -3'
miRNA:   3'- gGCACGGGU-----UCGGcCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 55168 0.72 0.38229
Target:  5'- uUCGUGCgCGucgacgacguGCCGGUGGGcAUGCGCg -3'
miRNA:   3'- -GGCACGgGUu---------CGGCCGCCUcUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 56238 0.69 0.553779
Target:  5'- aUCGUGCCCAugucGCCGGCcgacGAGGccGaCGCg -3'
miRNA:   3'- -GGCACGGGUu---CGGCCGc---CUCUa-C-GCG- -5'
25699 3' -59.7 NC_005337.1 + 56943 0.68 0.603178
Target:  5'- gCGUGgCCuc-CCGGCgGGAGAUGCu- -3'
miRNA:   3'- gGCACgGGuucGGCCG-CCUCUACGcg -5'
25699 3' -59.7 NC_005337.1 + 57245 0.71 0.477641
Target:  5'- gCCGUGCaCCGGcGCUGGUucgggcacGGGGccGCGCg -3'
miRNA:   3'- -GGCACG-GGUU-CGGCCG--------CCUCuaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.