miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 58077 0.67 0.672978
Target:  5'- cUCGUGgaCAAGCuCGGCGGc-GUGUGCu -3'
miRNA:   3'- -GGCACggGUUCG-GCCGCCucUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 58197 0.72 0.407033
Target:  5'- ---gGCCCGcguGGCCGaGCGGAaGAUGgGCg -3'
miRNA:   3'- ggcaCGGGU---UCGGC-CGCCU-CUACgCG- -5'
25699 3' -59.7 NC_005337.1 + 58999 0.68 0.603178
Target:  5'- -gGUGCUCAAGCgGaGCucgcuGGAGuggGUGCGCg -3'
miRNA:   3'- ggCACGGGUUCGgC-CG-----CCUC---UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 60066 0.66 0.72203
Target:  5'- ---cGCCgCAAGCaCGGCGGAGAacacgaaCGCc -3'
miRNA:   3'- ggcaCGG-GUUCG-GCCGCCUCUac-----GCG- -5'
25699 3' -59.7 NC_005337.1 + 60101 0.67 0.667018
Target:  5'- cCCG-GCCCGAGCgcgccucccgcagcaCGGCGGuGAccuCGCu -3'
miRNA:   3'- -GGCaCGGGUUCG---------------GCCGCCuCUac-GCG- -5'
25699 3' -59.7 NC_005337.1 + 60253 0.68 0.603178
Target:  5'- gCCGgaGUCgGAGCCGGaguCGGGGcagGCGCg -3'
miRNA:   3'- -GGCa-CGGgUUCGGCC---GCCUCua-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 61801 0.72 0.38229
Target:  5'- uCCGUGUCC-GGCaucucguaGuaGGAGAUGCGCc -3'
miRNA:   3'- -GGCACGGGuUCGg-------CcgCCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 63512 0.67 0.712333
Target:  5'- uCCGUGCUCAccgacgugcaGGCCucgGGCGu-GcgGCGCu -3'
miRNA:   3'- -GGCACGGGU----------UCGG---CCGCcuCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 64147 0.7 0.523746
Target:  5'- aCC-UGUCCcugacggAGGgCGGCgaGGAGAUGCGCg -3'
miRNA:   3'- -GGcACGGG-------UUCgGCCG--CCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 64323 0.68 0.643099
Target:  5'- gCGUGCCCA--CCacGCGGAGcgugGCGCc -3'
miRNA:   3'- gGCACGGGUucGGc-CGCCUCua--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 64658 0.76 0.232868
Target:  5'- uCCaUGUCCAcGUCGGCGaAGAUGCGCa -3'
miRNA:   3'- -GGcACGGGUuCGGCCGCcUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 66080 0.66 0.759998
Target:  5'- aCGcGgCCGcGgCGGCGGAGGcgcUGUGCg -3'
miRNA:   3'- gGCaCgGGUuCgGCCGCCUCU---ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 67551 0.69 0.553779
Target:  5'- gCGUGUCCGGGUugaGGCGGAag-GCGUc -3'
miRNA:   3'- gGCACGGGUUCGg--CCGCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 67722 0.72 0.398674
Target:  5'- cCCGUcGUCCuccgGGaCCGGCGGcGcgGCGCg -3'
miRNA:   3'- -GGCA-CGGGu---UC-GGCCGCCuCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 67896 0.7 0.515141
Target:  5'- gCGUGCUCGaagcgguggAGCCGGaCGGGaGUGcCGCg -3'
miRNA:   3'- gGCACGGGU---------UCGGCC-GCCUcUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 68290 0.7 0.515141
Target:  5'- gCG-GCC--GGCCGGCGGcguGGAcGCGCg -3'
miRNA:   3'- gGCaCGGguUCGGCCGCC---UCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 68338 0.76 0.249933
Target:  5'- gCGUGCCCGuGCCGGaGGAcg-GCGCg -3'
miRNA:   3'- gGCACGGGUuCGGCCgCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 68489 0.72 0.38229
Target:  5'- aCCGgGCgCCGcgcuGCUGGCGGccguGGGUGCGCc -3'
miRNA:   3'- -GGCaCG-GGUu---CGGCCGCC----UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 71271 0.66 0.731654
Target:  5'- aCGcGCUCAugcGCCGcGUGGcgcuGGUGCGCu -3'
miRNA:   3'- gGCaCGGGUu--CGGC-CGCCu---CUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 71543 0.67 0.660053
Target:  5'- gUCGUGCCCAGcaacgagacgcaccGCCGGaugauGGAGA--CGCu -3'
miRNA:   3'- -GGCACGGGUU--------------CGGCCg----CCUCUacGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.