miRNA display CGI


Results 21 - 40 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 118720 0.69 0.56358
Target:  5'- gCCGU--UCAAGCCGGUGGAcggcauggagacGAUGCuGCg -3'
miRNA:   3'- -GGCAcgGGUUCGGCCGCCU------------CUACG-CG- -5'
25699 3' -59.7 NC_005337.1 + 117818 0.72 0.390426
Target:  5'- gCGUggcGCCCGGGgacCCgGGCGG-GGUGCGCa -3'
miRNA:   3'- gGCA---CGGGUUC---GG-CCGCCuCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 117347 0.67 0.682885
Target:  5'- aCG-GCCaacgucGGCCGcGUGGAcGUGCGCa -3'
miRNA:   3'- gGCaCGGgu----UCGGC-CGCCUcUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 117264 0.69 0.583312
Target:  5'- gCG-GCCCGcagaccccgacgAGUCGGCGGGGucccGCGUg -3'
miRNA:   3'- gGCaCGGGU------------UCGGCCGCCUCua--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 115843 0.68 0.633113
Target:  5'- cCCGUGCUCAa---GGCGGAGcgGCu- -3'
miRNA:   3'- -GGCACGGGUucggCCGCCUCuaCGcg -5'
25699 3' -59.7 NC_005337.1 + 115609 0.69 0.569483
Target:  5'- aCCG-GCCCucggauccgcccGCCGGCGGcg--GCGCg -3'
miRNA:   3'- -GGCaCGGGuu----------CGGCCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 115438 0.67 0.66304
Target:  5'- gCGUGCUggcgauaGAGCCGGCGuacGAcGCGCu -3'
miRNA:   3'- gGCACGGg------UUCGGCCGCcu-CUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 115326 0.75 0.255846
Target:  5'- aCCGUGCUCGcgacgcccggcGGCgGGCGGAucUGCGUg -3'
miRNA:   3'- -GGCACGGGU-----------UCGgCCGCCUcuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 115287 0.75 0.261874
Target:  5'- aCCG-GCCCGAGCUcGCGGAGGaguacacGCGCc -3'
miRNA:   3'- -GGCaCGGGUUCGGcCGCCUCUa------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 115134 0.67 0.692752
Target:  5'- gCGUGCacaCGAcGCgcgUGGCGGAGGccUGCGUc -3'
miRNA:   3'- gGCACGg--GUU-CG---GCCGCCUCU--ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 112334 0.7 0.534337
Target:  5'- gCCGaUGaCCUccgcGAGCuCGGCGGAGc-GCGCg -3'
miRNA:   3'- -GGC-AC-GGG----UUCG-GCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 111544 0.66 0.750647
Target:  5'- gCGUGCagguCgGGGUCGGCGGugccguagacgAGGUGCGa -3'
miRNA:   3'- gGCACG----GgUUCGGCCGCC-----------UCUACGCg -5'
25699 3' -59.7 NC_005337.1 + 111071 0.68 0.613145
Target:  5'- aCUGcuUGUCC--GCgGGCGuGAGGUGCGCc -3'
miRNA:   3'- -GGC--ACGGGuuCGgCCGC-CUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 110325 0.68 0.623126
Target:  5'- gCCGUucgGCCC-GGCCgGGCGGcgucGCGCg -3'
miRNA:   3'- -GGCA---CGGGuUCGG-CCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 109725 0.66 0.72203
Target:  5'- gCCGgaacGCCgAgcAGUCGGCGG---UGCGCa -3'
miRNA:   3'- -GGCa---CGGgU--UCGGCCGCCucuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 108709 0.69 0.583312
Target:  5'- uCCGUGUUCcuggaggugGGGUCGGCGGAcaucggauucucGcgGCGCg -3'
miRNA:   3'- -GGCACGGG---------UUCGGCCGCCU------------CuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 107163 0.72 0.390426
Target:  5'- gCGUGgCCAAG-CGGCugcuGGAGAUGcCGCu -3'
miRNA:   3'- gGCACgGGUUCgGCCG----CCUCUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 106575 0.69 0.56358
Target:  5'- aUCGUGC---AGCCGGUGGcguGGAcGCGCg -3'
miRNA:   3'- -GGCACGgguUCGGCCGCC---UCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 105045 0.69 0.583312
Target:  5'- aCCGgcaggcgacGCCC-GGCCGcGCGGcGcUGCGCa -3'
miRNA:   3'- -GGCa--------CGGGuUCGGC-CGCCuCuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 103002 0.71 0.450421
Target:  5'- aCGUGCCCGAGCgCGGCccgcAGGUGgGg -3'
miRNA:   3'- gGCACGGGUUCG-GCCGcc--UCUACgCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.